Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq30393 210 2e-49 >seq30393 Length=6106 Score = 210 bits (232), Expect = 2e-49 Identities = 552/835 (66%), Gaps = 13/835 (2%) Strand=Plus/Plus Query 13918 ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13977 |||||||| |||||||||||||| |||||||| || || |||| ||||||||||| Sbjct 876 ATATTCACCGACTCTTTTTTCAAAAAAGTTAGTCTTTCCATCCAAGCTGATATTTTCCAT 935 Query 13978 AAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCT 14037 |||||| |||||||| ||| ||| | || | | || | || | || ||||| Sbjct 936 AAAATCGAATGGATTCTTTGTTGCAAAGATAATAGAATATCCCAATTGTTTTAATAATCG 995 Query 14038 ATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 14097 ||| |||| ||| || || |||| |||||||| | ||||||||| || | | || Sbjct 996 ATCTGCAACGAATTCGATGTATTCCGACATTAATTTTTGATTCATACCAATCA-TCCGAC 1054 Query 14098 A-GGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCG 14156 | || ||| | || | |||||||||||| | ||||| || || ||| | Sbjct 1055 ATGGGATTGATTCTGTGATAAATTCTTTTTCGTTCTGGACAGCTTCAGATACGATATTAT 1114 Query 14157 TAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAA---TTAAACACGCAAAAT 14213 | ||| | ||||| |||||| | | ||||| ||| | || || | Sbjct 1115 GGACTATTGTTTCTGAAGGTTTCCTTTTTAGGTAATGAAAAAGAGTTACA---GCGAACT 1171 Query 14214 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 14273 | ||| | || |||||||| || | || || ||||| | | || ||||||| Sbjct 1172 CTTGATGCAATCCTTCATCTCTTGATATCAACTCATTRGAAAAAGAAAGACCGGGCATCA 1231 Query 14274 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 14333 ||||||||||| ||||||||||| ||| ||| || || ||||| | || || || | Sbjct 1232 GACCTCGTTTTTTCAACCAAAATATGGCACAGAAGGAACCAGAAAATAGAATACCTTCCA 1291 Query 14334 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTC 14393 | |||||||||||||| |||||| | |||| | | ||| || ||||||||| Sbjct 1292 CACACGCAAACGCTATTAAACGTTCTGCGAACGCCGTATCTTTATT---GATCCATTTTT 1348 Query 14394 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTT 14453 |||||| | | ||||||| || || || || | ||| |||||||||| ||| Sbjct 1349 GAGCCCAGTATGCTTTTTTTGAAACCGAAGGGATGGTGTGAATCGCATTAAATAGATGAA 1408 Query 14454 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14513 ||| | | | || |||||| ||| || | |||||| ||||| | | ||| | Sbjct 1409 TCTTTTGTGCGTGATTTTTTATGTATCGATCTATCAATAAGCTGTACATCTGACTGTGAA 1468 Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-T 14572 | ||| | | ||| ||| ||||| | |||||||| ||| || || | Sbjct 1469 TAGATTCGTTGTATTGTTGATAACTGTAAAAGGCACGAGCTTCTGGAATTTGCACTTCAT 1528 Query 14573 GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC 14632 | |||||| || ||| | |||||||||||| || ||||| |||| || |||||| Sbjct 1529 CACTAAAAT-TTCTGGCGAGATTTTCATTAACAATCCCATCGGACCCTGCGAAGAATGCC 1587 Query 14633 AATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCC 14692 ||||| || | || || |||| || | | | || |||||| || ||| Sbjct 1588 AATATATTGCTTATGAAAAATTGTTCAGAGTCGTCCAACGATTCCCAATCAGCGTCGTCC 1647 Query 14693 TTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACA 14747 || |||| |||||||| ||| ||||| ||||| || | ||| |||| | ||| Sbjct 1648 TTTGAAAAGTCTACTTCGGTAACCGTCCAGAAACTCGCTATAGCCTTTTCAAACA 1702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482102962075240