Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq195 96.9 5e-15 >seq195 Length=29407 Score = 96.9 bits (106), Expect = 5e-15 Identities = 119/159 (75%), Gaps = 3/159 (2%) Strand=Plus/Plus Query 73924 TTCAAAATGGAGATATACTAGTGCTAAATAGACAACCTACTTTACATAAAGCATCAATGA 73983 || || |||||||| || | || ||| ||||||||| | ||||| ||| || |||| Sbjct 10614 TTAAAGATGGAGATGTAGTTGTTTTAA-TAGACAACCGTCGTTACACAAAATGTCCATGA 10672 Query 73984 TGGCTCTTCGAGTTAAAATTATGGATGTAAAAACCTTTAAATTTAATCTTGCATGC-ACT 74042 ||| | | ||| ||| || | || | ||| || |||||||| ||| || ||| ||| Sbjct 10673 TGGGACATAAAGTAAAAGTTGTCGAAGGAAATACGTTTAAATTGAAT-TTATCTGCGACT 10731 Query 74043 AAACCATATAATGCAGATTTTGATGGAGATGAAATGAAT 74081 | || || ||||||||||||||||| |||||||||||| Sbjct 10732 ACTCCTTACAATGCAGATTTTGATGGCGATGAAATGAAT 10770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679472427863760