Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq8895 86.0 5e-12 >seq8895 Length=8815 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/237 (68%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 24826 AACATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAA 24885 |||| ||||||||| ||||| ||||| | || || || || || ||| | || || || Sbjct 574 AACACCATGCAGATCTTTGTGAAAACGCTTACTGGTAAGACCATCACCTTGGAGGTAGA- 632 Query 24886 TCGAGC---GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCG 24942 ||| |||| | | || | || |||| |||||| | |||||||| | || Sbjct 633 --GAGTTCTGACACTATTGACAACGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCA 690 Query 24943 GTTGACCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAAC 25002 |||||| ||| | || |||| |||||||||||||||||||| ||| || Sbjct 691 CCTGACCAACAAAGATTGATATTCGCGGGCAAACAACTGGAAGACGGGCGGACACTGGCT 750 Query 25003 GATTACAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 ||||||| ||| || ||||| | || ||||| | ||| | || | || |||||| Sbjct 751 GATTACAACATCCAAAAAGAATCTACTCTTCACCTCGTGCTTCGTCTACGTGGAGGT 807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418098837966560