Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq7861 147 2e-30 seq18528 96.9 3e-15 seq195 95.1 1e-14 seq8895 89.7 5e-13 seq1570 82.4 7e-11 >seq7861 Length=6948 Score = 147 bits (162), Expect = 2e-30 Identities = 450/689 (65%), Gaps = 14/689 (2%) Strand=Plus/Plus Query 22109 TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTC 22168 ||||| || |||| ||||| | ||| || | |||||| || ||||| ||||| || ||| Sbjct 2529 TCCACGGTGAACTTGATGGCATCTGCTGCAGATTTGGTACGGAGATAGTACATACCGGTC 2588 Query 22169 TTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC--GTCAATTTTCCATAACTCGGCA 22226 |||| |||| || ||||||| | || || | ||| |||| ||||| || | |||| Sbjct 2589 TTCAAACCCTTCCTCCACGCATGGAAGTGCA--GACTGGTCAGCTTTCCG-AAGTTGGCA 2645 Query 22227 --AGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 |||| |||| ||| || || ||| ||||| || || || || |||| || || | Sbjct 2646 TCAGTC-ATGTGCACGTTAAAGCTCTGGCTCTGGTCAATGAAGGCACCTCTGTCAGCAGA 2704 Query 22285 CATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC 22344 ||| | || | ||| ||| |||||||| || ||||||||||| | | | || Sbjct 2705 CATGTCTACGAGTGTTCGCTGTTTGATTTCCCACACTGTCTTGTACAGACGTTTAAGGTC 2764 Query 22345 TAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAAT 22404 || || ||| |||| ||| ||| ||||| ||| | | | || | Sbjct 2765 ATCGGGGATGTTAGGGATGTTCTGCACGCTGCCG---TTGTGCGCGATTAGAATGTTCTT 2821 Query 22405 CGTAT---CGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCAC 22461 | | | | ||||| | || | | | ||||| || |||| || || |||||||||| Sbjct 2822 CATGTCTGCATTCCAAAGGCCTAGGTCTGTCAAGTCGTTGAGCAAGTGCTGGTTCACCAC 2881 Query 22462 TTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGA 22521 ||||||||| || || | || || |||||| |||| | || ||||| | Sbjct 2882 GGTGAACTCGCCGCTCAGCACCCTCCGGGCATAGATGTTGCTTGTGTAAGGCTCGAAGCA 2941 Query 22522 TTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGA 22581 || ||||| ||||| ||||| | ||| || || || ||||| || |||| || || || Sbjct 2942 CTCGTTGTTGCCCAGGATCTGCGAGGTGGAGGCCGTGGGCATGGGAGCCACGAGGAGGGA 3001 Query 22582 GTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGA 22641 ||| | || ||||||||| | ||| | | ||| | |||||| | || || Sbjct 3002 GTTGCGCACGCCGTGCTTGGCAATGTCCTCCCGGAGACCAGCCCAGTCGTGACGGTCTGA 3061 Query 22642 CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTC 22701 || | | || |||||| ||||| |||| | || ||| ||||||||||| Sbjct 3062 GGGGGCCTCAACTCCCCACAGATCGTGCTGCAGCTGACCTTTGCTCATGGGGCTGCCTTC 3121 Query 22702 GTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTA 22761 ||||| || || | ||| | | ||| || | |||| | | | || || | Sbjct 3122 ATACGTCTCATAAGTACCCTCCTCCTGGGCTAGCTGGCAGGACTCGGTGAGTGCCGCGAA 3181 Query 22762 ATATATAGTCTCGAAGATTTTCTTGTTCA 22790 || | |||||| ||||||| |||||||| Sbjct 3182 GTAAACAGTCTCAAAGATTTCCTTGTTCA 3210 >seq18528 Length=5764 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 ||||| ||| ||||||||| || || ||||| | |||||| |||||||||| ||| Sbjct 4055 GCGTTTGCCTGCGTCGAAGGCATCTTTTTTTCTGCGAGCTTTTGTGCAATATTTTACATG 4114 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 ||||| | || |||||||||| || || || ||||| ||||| | || || || Sbjct 4115 AAGAAGCAAGGTTTGATGCCCGGTTTGTGTTTCAGTAACGAATTGATCGCTCGTGATGAA 4174 Query 58101 GGTCTCCATACTGATTTTGCGTGCCT 58126 ||| | ||| ||||||||||||||| Sbjct 4175 GGTATGCATCGTGATTTTGCGTGCCT 4200 >seq195 Length=29407 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || | || ||| | ||||| ||||| || || ||||||||||| | || Sbjct 26996 CATGCAAATATTTATCAAAACTTTAACAGGTAAAACTATAACACTCGACGTTGAATCTTC 27055 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || || | ||| ||| |||||||| |||| |||||||| Sbjct 27056 AGATACGATAGATAACGTAAAGTCTAAAATCCAGGATAAGGAAGGAATGCCACCCGACCA 27115 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || || | || || || || ||||| ||||||||| | || || | ||||| || Sbjct 27116 ACAACGATTGATTTTTGCAGGAAAACAATTGGAAGACGGGAGAACATTGGGTGATTACAA 27175 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || ||||||||||| || | ||||| || Sbjct 27176 TATACAAAAAGAATCAACCTTACATCTCGT 27205 >seq8895 Length=8815 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || || || || || || || || |||||| | || || || || Sbjct 579 CATGCAGATCTTTGTGAAAACGCTTACTGGTAAGACCATCACCTTGGAGGTAGAGAGTTC 638 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | ||||| | ||| ||||| ||||| | || || ||||| Sbjct 639 TGACACTATTGACAACGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCACCTGACCA 698 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || | | |||||||| |||||||| |||||||| ||| || ||||| || Sbjct 699 ACAAAGATTGATATTCGCGGGCAAACAACTGGAAGACGGGCGGACACTGGCTGATTACAA 758 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| ||||||||||| |||||||| || || ||| Sbjct 759 CATCCAAAAAGAATCTACTCTTCACCTCGTGCTT 792 >seq1570 Length=19022 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 57992 CGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGG 58051 |||||| || ||||| || || | ||| ||| || || |||| ||||| || | || Sbjct 12201 CGTCGAGGGCATATTTTTCTCCGCCAGTTTTTGCGCCATCTTTTACATGAAAAAGCAGGG 12142 Query 58052 CCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATAC 58111 ||||||||||| ||| |||| ||||||||| | || |||||||||| || | || Sbjct 12141 GCTGATGCCCGGTCTGTCGTTCAGCAACGAGCTCATCGCGCGCGACGAAGGCATGCACCG 12082 Query 58112 TGATTTTGCGTGCCT 58126 ||||| || ||||| Sbjct 12081 CGATTTCGCTTGCCT 12067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445542162784560