Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq30393 134 1e-26 >seq30393 Length=6106 Score = 134 bits (148), Expect = 1e-26 Identities = 578/895 (65%), Gaps = 44/895 (5%) Strand=Plus/Plus Query 11334 CCATCTTTTG-ATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAG--TG 11390 ||| |||| | |||||||| |||| | ||| ||||| |||||||| || || | || Sbjct 865 CCAGCTTTCGCATATTCACCGACTCTTTTTTCAAAAAAGTTAGTCTTTCCATCCAAGCTG 924 Query 11391 ATATATACTCCATAAAGCTAAAAGGATTATATACATTG--AAGACTTTTTCACAACCTAA 11448 |||| | |||||||| || ||||| | | ||| |||| | | | || || Sbjct 925 ATATTT--TCCATAAAATCGAATGGATTCTTTG--TTGCAAAGATAATAGAATATCCCAA 980 Query 11449 CTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCAT 11508 | | ||||||||| |||||| |||||||| || || | |||||||| |||||| Sbjct 981 TTGTTTTAATAATCGATCTGCAACGAATTCGATGTATTCCGACATTAATTTTTGATTCAT 1040 Query 11509 ACCTATAAGATCCACC--GGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCA 11566 ||| || | ||| | || || | |||| | ||| || ||||| | | || || Sbjct 1041 ACCAATCA--TCCGACATGGGATTGATTCTGTGATAAATTCTTTTTCGTTCTGGACAGCT 1098 Query 11567 TCA---ATGAT--TATCGACGTTATAACTTCCTTAGATGG----TGGATGTAATAAATGT 11617 ||| | ||| ||| ||| ||| ||| || | | | ||||| || Sbjct 1099 TCAGATACGATATTATGGAC--TATTGTTTCTGAAGGTTTCCTTTTTAGGTAATGAA--- 1153 Query 11618 TTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTA 11677 ||| | | | || || || || ||| || ||||| ||||| ||| | ||||| Sbjct 1154 --AAAGAGTTA-CA-GCGAACTCTTGATGCAATCCTTCATCTCTTGATATCAACTCATTR 1209 Query 11678 GAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAA 11737 ||||| | | |||||||||| ||||||||||| | ||||||||| ||| || ||| Sbjct 1210 GAAAAAGAAAGACCGGGCATCAGACCTCGTTTTTTCAACCAAAATATGGCACAGAAGGAA 1269 Query 11738 CCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTG 11797 |||||||| | || || |||||| ||||| |||| || | |||| | | || | Sbjct 1270 CCAGAAAATAGAATACCTTCCACACACGCAAACGCTATTAAACGTTCTGCGAACGCCGTA 1329 Query 11798 TTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCT 11857 | || ||||||||| ||||| | ||||| ||| || | || || | Sbjct 1330 TCTTTATTGATCCATTTTTGAGCCCAGTATGCTTTTTTTGAAACCGAAGGGATGGTGTGA 1389 Query 11858 ATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAA 11917 || || ||||||| ||| || |||| | | || | ||| ||| |||||| ||||| Sbjct 1390 ATCGCATTAAATAGATGAATCTTTTGTGCGTGATTTTTTATGTATCGATCTATCAATAAG 1449 Query 11918 CTATACATTTCTGA--ATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTG 11975 || |||| ||||| |||||| ||| | | |||| | | || || || | Sbjct 1450 CTGTACA--TCTGACTGTGAATAGATTCGTTGTATTGTTGATAACTGTAAAAGGCACGAG 1507 Query 11976 CCTCTGAACACTGTACATCCACA-TAAAATCTTTCCGCTAAATTCTCATTTACAATACCA 12034 | |||| | || || || || |||||| || || | ||| ||||| ||||| ||| Sbjct 1508 CTTCTGGAATTTGCACTTCATCACTAAAAT-TTCTGGCGAGATTTTCATTAACAATCCCA 1566 Query 12035 TCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTC---GTCTTTAGTT 12091 || ||| || ||||| | ||||| |||| || ||| ||| ||| | Sbjct 1567 TCGGACCCTGCGAAGAATGCCAATATATTGCTTATGAAAAATTGTTCAGAGTCGT---CC 1623 Query 12092 AATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTT 12151 || ||||||||| | || ||||| || |||||||| ||| ||||| ||||| Sbjct 1624 AACGATTCCCAATCAGCGTCGTCCTTTGAAAAGTCTACTTCGGTAACCGTCCAGAAACTC 1683 Query 12152 GCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAA-AATA 12205 || | | | || | ||| | | | ||| |||| | ||||||||| |||| Sbjct 1684 GCTATAGCCTTTTCAAACAAGGTATATAAATCGKGATATTGAATAGGGAATAATA 1738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468289114455920