Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq30393 91.5 2e-13 seq319 86.0 8e-12 >seq30393 Length=6106 Score = 91.5 bits (100), Expect = 2e-13 Identities = 275/419 (66%), Gaps = 6/419 (1%) Strand=Plus/Plus Query 36194 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 36253 || || || || ||||| | || |||||||| || || || ||||| | |||||||||| Sbjct 1198 ATCAACTCATTRGAAAAAGAAAGACCGGGCATCAGACCTCGTTTTTTCAACCAAAATATG 1257 Query 36254 GACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC 36312 | | || || || |||||||| | ||| ||||| || |||||| || || | | || Sbjct 1258 G-CACAGAAGGAACCAGAAAATAGAATACCTTCCACACACGCAAACGCTATTAAACGTTC 1316 Query 36313 TCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACA 36372 | | | | | | | || ||||| ||||||||||| | || || ||| || | Sbjct 1317 TGCGAACGCCGTATCTTTATTGATCCATTTTTGAGCCCAGTATGCTTTTTTTGAAACCGA 1376 Query 36373 AGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGT 36432 ||| || || | || |||||||| |||| | |||| || ||| | ||| Sbjct 1377 AGGGATGGTGTGAATCGCATTAAATAGATGAATCTTTTGTGCGTGATTTTTTATGTATCG 1436 Query 36433 ATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTA 36492 ||| ||||| | || ||||| | ||||| ||| || |||| | | ||| Sbjct 1437 ATCTATCAATAAGCTGTACATCTGACTGTGAATAGATTCGTTGTATTGTTGATAACTGTA 1496 Query 36493 GAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC-AAAATCGTTCT-GCTAAATTTTCA 36550 || | ||| || | ||| || ||||| || ||||| |||| || | ||||||| Sbjct 1497 AAAGGCACGAGCTTCTGGAATTTGCACTTCATCACTAAAAT--TTCTGGCGAGATTTTCA 1554 Query 36551 TTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC 36609 || || || || || |||| || || ||||||| || |||| ||| ||| ||| Sbjct 1555 TTAACAATCCCATCGGACCCTGCGAAGAATGCCAATATATTGCTTATGAAAAATTGTTC 1613 >seq319 Length=35189 Score = 86.0 bits (94), Expect = 8e-12 Identities = 77/96 (80%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || || |||||||| || |||||||||| |||||||||||| || |||||||| Sbjct 33476 CAGGCAAAGTCGCAGTGGAGTCCCTCGTCTCGGGAAATTAATTCGTTAGAGAACGTGAGC 33535 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCA--AAATA 36251 |||||||||| ||||| || || ||||| ||||| Sbjct 33536 CCGGGCATTAATCCACGTTTCTTCAGCCAGTAAATA 33571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657841714400120