Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq8895 89.7 5e-13 seq195 86.0 6e-12 >seq8895 Length=8815 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | || | ||||| ||||| |||||||| ||||| ||||| | Sbjct 806 CCTCCACGTAGACGAAGCACGAGGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGCC 747 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | | |||||| || ||||| || || | |||| | ||| || || || || Sbjct 746 AGTGTCCGCCCGTCTTCCAGTTGTTTGCCCGCGAATATCAATCTTTGTTGGTCAGGTGGG 687 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| | || | | || | ||||| | ||| || Sbjct 686 ATTCCTTCTTTGTC-TTGAATTTTGGCCTTGACGTTGTCAATAGTGTCAGAACTCTCTAC 628 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||| || || | |||||| || || || ||||| Sbjct 627 CTCCAAGGTGATGGTCTTACCAGTAAGCGTTTTCACAAAGATCTGCAT 580 >seq195 Length=29407 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||||||| || | || | || || |||||||| || || ||||| | | Sbjct 27223 CCTCCTCTTAAACGCAACACGAGATGTAAGGTTGATTCTTTTTGTATATTGTAATCACCC 27164 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| ||| |||||| | ||||| || ||| | |||| ||||| || ||||| || Sbjct 27163 AATGTTCTCCCGTCTTCCAATTGTTTTCCTGCAAAAATCAATCGTTGTTGGTCGGGTGGC 27104 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| || || |||||| |||| | || | || || | | || || Sbjct 27103 ATTCCTTCCTTATCCTGGATTTTAGACTTTACGTTATCTATCGTATCTGAAGATTCAACG 27044 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || || || ||||| | ||||||||||| Sbjct 27043 TCGAGTGTTATAGTTTTACCTGTTAAAGTTTTGATAAATATTTGCAT 26997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495814461205600