Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015-
08-05] 40,243 sequences; 281,270,454 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq30393 201 1e-46
>seq30393
Length=6106
Score = 201 bits (222), Expect = 1e-46
Identities = 552/836 (66%), Gaps = 15/836 (2%)
Strand=Plus/Plus
Query 13586 ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13645
|||||||| |||||||||||||| |||||||| || || |||| |||||||||||
Sbjct 876 ATATTCACCGACTCTTTTTTCAAAAAAGTTAGTCTTTCCATCCAAGCTGATATTTTCCAT 935
Query 13646 AAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCT 13705
|||||| |||||||| ||| ||| | || | | || | || | || |||||
Sbjct 936 AAAATCGAATGGATTCTTTGTTGCAAAGATAATAGAATATCCCAATTGTTTTAATAATCG 995
Query 13706 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13765
||| |||| || || || |||| |||||||| | ||||||||| || | | ||
Sbjct 996 ATCTGCAACGAATTCGATGTATTCCGACATTAATTTTTGATTCATACCAATCA-TCCGAC 1054
Query 13766 A-GGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT-T 13823
| || ||| | || | |||||||||||| | ||||| || || ||| | |
Sbjct 1055 ATGGGATTGATTCTGTGATAAATTCTTTTTCGTTCTGGACAGCTTCAGATACGATATTAT 1114
Query 13824 GTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAA---TTAAACACGCAAAA 13880
| | || | | | ||||| |||||| | | ||||| ||| | || ||
Sbjct 1115 GGACTATTGTTTCT-GAAGGTTTCCTTTTTAGGTAATGAAAAAGAGTTACA---GCGAAC 1170
Query 13881 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13940
|| ||| | || |||||||| || | || || ||||| | | || ||||||
Sbjct 1171 TCTTGATGCAATCCTTCATCTCTTGATATCAACTCATTRGAAAAAGAAAGACCGGGCATC 1230
Query 13941 AATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCA 14000
| ||||||||||| ||||||||||| ||| || || || ||||| | || || ||
Sbjct 1231 AGACCTCGTTTTTTCAACCAAAATATGGCACAGAAGGAACCAGAAAATAGAATACCTTCC 1290
Query 14001 ACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTT 14060
|| |||||||||||||| |||||| | |||| | | ||| || |||||||||
Sbjct 1291 ACACACGCAAACGCTATTAAACGTTCTGCGAACGCCGTATCTTTATT---GATCCATTTT 1347
Query 14061 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATAT 14120
|||||| | | ||||||| || || || || | ||| |||||||||| ||
Sbjct 1348 TGAGCCCAGTATGCTTTTTTTGAAACCGAAGGGATGGTGTGAATCGCATTAAATAGATGA 1407
Query 14121 TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 14180
||| | | | || |||||| ||| || | |||||| ||||| | | |||
Sbjct 1408 ATCTTTTGTGCGTGATTTTTTATGTATCGATCTATCAATAAGCTGTACATCTGACTGTGA 1467
Query 14181 ATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC- 14239
|| ||| | | ||| ||| |||||| | |||||| | ||| |||||
Sbjct 1468 ATAGATTCGTTGTATTGTTGATAACTGTAAAAGGCACGAGCTTCTGGAATTTGCACTTCA 1527
Query 14240 CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14299
| |||||| || ||| | |||||||||||| || ||||| |||| || |||||
Sbjct 1528 TCACTAAAAT-TTCTGGCGAGATTTTCATTAACAATCCCATCGGACCCTGCGAAGAATGC 1586
Query 14300 CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATC 14359
|||||| || | || || |||| || | || | || |||||| | ||
Sbjct 1587 CAATATATTGCTTATGAAAAATTGTTCAGAGTCGTCCAACGATTCCCAATCAGCGTCGTC 1646
Query 14360 CTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACA 14415
||| |||| |||||||| ||| ||||| ||||| || | ||| |||| | |||
Sbjct 1647 CTTTGAAAAGTCTACTTCGGTAACCGTCCAGAAACTCGCTATAGCCTTTTCAAACA 1702
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479486678826200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |