Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq30393 201 1e-46 >seq30393 Length=6106 Score = 201 bits (222), Expect = 1e-46 Identities = 552/836 (66%), Gaps = 15/836 (2%) Strand=Plus/Plus Query 13586 ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13645 |||||||| |||||||||||||| |||||||| || || |||| ||||||||||| Sbjct 876 ATATTCACCGACTCTTTTTTCAAAAAAGTTAGTCTTTCCATCCAAGCTGATATTTTCCAT 935 Query 13646 AAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCT 13705 |||||| |||||||| ||| ||| | || | | || | || | || ||||| Sbjct 936 AAAATCGAATGGATTCTTTGTTGCAAAGATAATAGAATATCCCAATTGTTTTAATAATCG 995 Query 13706 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13765 ||| |||| || || || |||| |||||||| | ||||||||| || | | || Sbjct 996 ATCTGCAACGAATTCGATGTATTCCGACATTAATTTTTGATTCATACCAATCA-TCCGAC 1054 Query 13766 A-GGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT-T 13823 | || ||| | || | |||||||||||| | ||||| || || ||| | | Sbjct 1055 ATGGGATTGATTCTGTGATAAATTCTTTTTCGTTCTGGACAGCTTCAGATACGATATTAT 1114 Query 13824 GTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAA---TTAAACACGCAAAA 13880 | | || | | | ||||| |||||| | | ||||| ||| | || || Sbjct 1115 GGACTATTGTTTCT-GAAGGTTTCCTTTTTAGGTAATGAAAAAGAGTTACA---GCGAAC 1170 Query 13881 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13940 || ||| | || |||||||| || | || || ||||| | | || |||||| Sbjct 1171 TCTTGATGCAATCCTTCATCTCTTGATATCAACTCATTRGAAAAAGAAAGACCGGGCATC 1230 Query 13941 AATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCA 14000 | ||||||||||| ||||||||||| ||| || || || ||||| | || || || Sbjct 1231 AGACCTCGTTTTTTCAACCAAAATATGGCACAGAAGGAACCAGAAAATAGAATACCTTCC 1290 Query 14001 ACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTT 14060 || |||||||||||||| |||||| | |||| | | ||| || ||||||||| Sbjct 1291 ACACACGCAAACGCTATTAAACGTTCTGCGAACGCCGTATCTTTATT---GATCCATTTT 1347 Query 14061 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATAT 14120 |||||| | | ||||||| || || || || | ||| |||||||||| || Sbjct 1348 TGAGCCCAGTATGCTTTTTTTGAAACCGAAGGGATGGTGTGAATCGCATTAAATAGATGA 1407 Query 14121 TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 14180 ||| | | | || |||||| ||| || | |||||| ||||| | | ||| Sbjct 1408 ATCTTTTGTGCGTGATTTTTTATGTATCGATCTATCAATAAGCTGTACATCTGACTGTGA 1467 Query 14181 ATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC- 14239 || ||| | | ||| ||| |||||| | |||||| | ||| ||||| Sbjct 1468 ATAGATTCGTTGTATTGTTGATAACTGTAAAAGGCACGAGCTTCTGGAATTTGCACTTCA 1527 Query 14240 CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14299 | |||||| || ||| | |||||||||||| || ||||| |||| || ||||| Sbjct 1528 TCACTAAAAT-TTCTGGCGAGATTTTCATTAACAATCCCATCGGACCCTGCGAAGAATGC 1586 Query 14300 CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATC 14359 |||||| || | || || |||| || | || | || |||||| | || Sbjct 1587 CAATATATTGCTTATGAAAAATTGTTCAGAGTCGTCCAACGATTCCCAATCAGCGTCGTC 1646 Query 14360 CTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACA 14415 ||| |||| |||||||| ||| ||||| ||||| || | ||| |||| | ||| Sbjct 1647 CTTTGAAAAGTCTACTTCGGTAACCGTCCAGAAACTCGCTATAGCCTTTTCAAACA 1702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479486678826200