Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq30393 214 2e-50 >seq30393 Length=6106 Score = 214 bits (236), Expect = 2e-50 Identities = 556/837 (66%), Gaps = 17/837 (2%) Strand=Plus/Plus Query 13374 ATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13433 |||||||| ||||||||||||||||||||||| || || |||| ||||||||||| Sbjct 876 ATATTCACCGACTCTTTTTTCAAAAAAGTTAGTCTTTCCATCCAAGCTGATATTTTCCAT 935 Query 13434 AAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCT 13493 ||||||||||||||| ||| ||| | || | | || | || | |||||||| Sbjct 936 AAAATCGAATGGATTCTTTGTTGCAAAGATAATAGAATATCCCAATTGTTTTAATAATCG 995 Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553 ||| |||| || || || |||| |||||||| | ||||||||| || | | || Sbjct 996 ATCTGCAACGAATTCGATGTATTCCGACATTAATTTTTGATTCATACCAATCA-TCCGAC 1054 Query 13554 A-GGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCT 13612 | || ||| | || | |||||||||||| | ||||| || || ||| | | Sbjct 1055 ATGGGATTGATTCTGTGATAAATTCTTTTTCGTTCTGGACAGCTTCAGATACGATATTAT 1114 Query 13613 TAA-TAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAA---TTAAACACGCAAAA 13668 | || ||| | ||||| |||||| | | ||||| ||| | || || Sbjct 1115 GGACTATTGTTTCT-GAAGGTTTCCTTTTTAGGTAATGAAAAAGAGTTACA---GCGAAC 1170 Query 13669 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13728 || ||| | || |||||||| || | || || ||||| | | || |||||| Sbjct 1171 TCTTGATGCAATCCTTCATCTCTTGATATCAACTCATTRGAAAAAGAAAGACCGGGCATC 1230 Query 13729 AATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCA 13788 | ||||||||||| ||||||||||| ||| ||| || || ||||| | || || || Sbjct 1231 AGACCTCGTTTTTTCAACCAAAATATGGCACAGAAGGAACCAGAAAATAGAATACCTTCC 1290 Query 13789 ACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTT 13848 || ||||||||||||| |||||| | |||| | | ||| || ||||||||| Sbjct 1291 ACACACGCAAACGCTATTAAACGTTCTGCGAACGCCGTATCTTTATT---GATCCATTTT 1347 Query 13849 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGT 13908 |||||| | | ||||||| || || || || | || ||||| |||| ||| Sbjct 1348 TGAGCCCAGTATGCTTTTTTTGAAACCGAAGGGATGGTGTGAATCGCATTAAATAGATGA 1407 Query 13909 TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 13968 ||| | | | || |||||| ||| || | |||||| ||||| | | ||| Sbjct 1408 ATCTTTTGTGCGTGATTTTTTATGTATCGATCTATCAATAAGCTGTACATCTGACTGTGA 1467 Query 13969 ATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC- 14027 || ||| | | ||| ||| ||||| | |||||||| ||| || || Sbjct 1468 ATAGATTCGTTGTATTGTTGATAACTGTAAAAGGCACGAGCTTCTGGAATTTGCACTTCA 1527 Query 14028 CGAGTAAAATCTTTCTGCCAAG-TTTTCATTAACAATACCATCACTAGCTGCAAAAAATG 14086 | ||||| |||||| | || |||||||||||||| ||||| |||| || |||| Sbjct 1528 TCACTAAAA--TTTCTGGCGAGATTTTCATTAACAATCCCATCGGACCCTGCGAAGAATG 1585 Query 14087 CCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAAT 14146 ||||||| || | || || |||| || | || | || |||||| || | Sbjct 1586 CCAATATATTGCTTATGAAAAATTGTTCAGAGTCGTCCAACGATTCCCAATCAGCGTCGT 1645 Query 14147 CCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACA 14203 |||| |||| |||||||| ||| ||||| ||||| || | ||| |||| | ||| Sbjct 1646 CCTTTGAAAAGTCTACTTCGGTAACCGTCCAGAAACTCGCTATAGCCTTTTCAAACA 1702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478348051886520