Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq195 100 2e-16 seq12187 87.8 1e-12 >seq195 Length=29407 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | ||||||||| |||||| | |||| ||||||||||| || |||||| Sbjct 27187 TCTTTTTGTATATTGTAATCACCCAATGTTCTCCCGTCTTCCAATTGTTTTCCTGCAAAA 27128 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCT 43037 |||||||| ||||| |||| |||| ||||| || || || | | |||| || | Sbjct 27127 ATCAATCGTTGTTGGTCGGGTGGCATTCCTTCCTTATCCTGGATTTTAGACTTT-ACGTT 27069 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | || || || || ||||| | ||||||||||| || |||| |||||| | Sbjct 27068 ATCTATCGTATCTGAAGATTCAACGTCGAGTGTTATAGTTTTACCTGTTAAAGTTTTGAT 27009 Query 43098 AAAAATTTGCAT 43109 ||| |||||||| Sbjct 27008 AAATATTTGCAT 26997 >seq12187 Length=9842 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||||||||| | | |||||| || | ||| |||||| || | |||||| || | Sbjct 9619 GCCTCCACGCAGGCGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGC 9678 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || || |||| |||| || || |||||||||||||| ||||| || |||| || Sbjct 9679 CAGAGTGCGCCCGTCCTCCAGCTGCTTCCCGGCAAAAATCAACCGCTGCTGGTCGGGAGG 9738 Query 43002 CACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCG 43059 | || || || || ||| ||| | || || || ||| ||||| ||| ||| Sbjct 9739 GATGCCCTCCTTATC-CTGAATCTTGGCCTTCACGTTGTCAATAGTGTC-TGAGCTCTCC 9796 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAAT 43103 || || | ||| || || || ||||| || ||||| || || || Sbjct 9797 ACCTCCAGCGTGATGGTCTTCCCGGTGAGGGTTTTTACGAAGAT 9840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381182552870094