Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq30393 95.1 2e-14 >seq30393 Length=6106 Score = 95.1 bits (104), Expect = 2e-14 Identities = 579/913 (63%), Gaps = 30/913 (3%) Strand=Plus/Plus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 ||||||||| ||| |||||||| || | |||||| ||||| ||||||||||| || Sbjct 858 CATAACTCCAGCTTTCGCATATTCACCGACTCTTTTTTCAAAAAAGTTAGTCTTTCCATC 917 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 41880 ||| ||||||||||| ||||| || ||||| | | | || | | |||| Sbjct 918 CAAGCTGATATTTTCCATAAAATCGAATGGATTCTTTGTTGCAAAGATAATAGAATATCC 977 Query 41881 CAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATT 41940 ||||| | |||| |||||| | |||||| || ||| ||| | || ||| Sbjct 978 CAATTGTTTTAATAATCGATCTGCAACGAATTCGATGTATTCCGACATTAATTTTTGATT 1037 Query 41941 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 42000 ||| || || | | ||| | | | || | |||||||| ||| | ||| || Sbjct 1038 CATACCAATCATCCGACATGGGATTGATTCTGTGATAAATTCTTTTTCGTTCTGGACAGC 1097 Query 42001 GTCTGTTATAATAG-ATCT--TACTGTTTCTTCACTCGGTGGATACAATAAATGTT-TAA 42056 || | || ||| || || ||||||| | ||| | | | | || | | Sbjct 1098 TTCAGATACGATATTATGGACTATTGTTTCTGAA---GGTT--TCCTTTTTAGGTAATGA 1152 Query 42057 ACATCAA--ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGA 42114 | | | ||| ||||| || |||| || |||||||| || || || || || Sbjct 1153 AAAAGAGTTACA-GCGAACTCTTGATGCAATCCTTCATCTCTTGATATCAACTCATTRGA 1211 Query 42115 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATC 42173 ||| | || |||||||| || || || ||||| | ||||||||| | | || || || | Sbjct 1212 AAAAGAAAGACCGGGCATCAGACCTCGTTTTTTCAACCAAAATATGG-CACAGAAGGAAC 1270 Query 42174 CAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC 42233 ||||||| | || ||||| || |||||| || || | | ||| | | | | | Sbjct 1271 CAGAAAATAGAATACCTTCCACACACGCAAACGCTATTAAACGTTCTGCGAACGCCGTAT 1330 Query 42234 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 | || ||||| ||||||||||| | || || ||| || |||| || || | | Sbjct 1331 CTTTATTGATCCATTTTTGAGCCCAGTATGCTTTTTTTGAAACCGAAGGGATGGTGTGAA 1390 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 | |||||||| |||| | |||| || ||| | ||| ||| ||||| | | Sbjct 1391 TCGCATTAAATAGATGAATCTTTTGTGCGTGATTTTTTATGTATCGATCTATCAATAAGC 1450 Query 42354 TATACATTTCTGA--ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGC 42411 | |||| ||||| ||||| ||| || ||| | | ||| || | || Sbjct 1451 TGTACA--TCTGACTGTGAATAGATTCGTTGTATTGTTGATAACTGTAAAAGGCACGAGC 1508 Query 42412 CTCGGTAACCTGTACTTCTGTAC-AAAATCGTTC-AGCTAAATTTTCGTTCACTATTCCG 42469 || | || || ||||| || ||||| ||| || | |||||| || || || || Sbjct 1509 TTCTGGAATTTGCACTTCATCACTAAAAT--TTCTGGCGAGATTTTCATTAACAATCCCA 1566 Query 42470 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC---GTCCGGTGTT 42526 || |||| || || ||||||| || |||| ||| ||| ||| ||| || Sbjct 1567 TCGGACCCTGCGAAGAATGCCAATATATTGCTTATGAAAAATTGTTCAGAGTC----GTC 1622 Query 42527 AATTTATT-CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGA 42585 | ||| ||||||| | || || || | |||||||| |||||||| || Sbjct 1623 CAACGATTCCCAATCAGCGTCGTCCTTTGAAAAGTCTACTTCGGTAACCGTCCAGAAACT 1682 Query 42586 TGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 ||| ||||||| | ||| | | | ||| |||||||||| ||||| | ||| | Sbjct 1683 CGCTATAGCCTTTTCAAACAAGGTATATAAATCGKGATATTGAATAGGGAATAATACATA 1742 Query 42646 TCTATTTGGATTT 42658 || |||||||||| Sbjct 1743 TCGATTTGGATTT 1755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670801591814680