Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq27800 95.1 2e-14 seq4459 89.7 8e-13 >seq27800 Length=2063 Score = 95.1 bits (104), Expect = 2e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGCT 125491 || ||||| ||| |||||||||||||| || | ||||| ||| || ||||||||| | Sbjct 473 GCTTTCGCGTGCGTGGAGGGCATCTTCTTCTCCGCGAGTTTCTGC-GCTATCTTTTGGTT 531 Query 125492 CAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGA 125551 |||||||||||||| ||||| || || | ||| |||||| | || |||| ||||| Sbjct 532 GAAGAAGCGCGGACTGATGCCGGGGCTCGCCTTCAGCAACGAGCTCATCGCTCGCGACGA 591 Query 125552 GGGCCTACACTGTGACTTTGC 125572 ||| | ||| | ||||| || Sbjct 592 GGGGATGCACAGAGACTTCGC 612 >seq4459 Length=9375 Score = 89.7 bits (98), Expect = 8e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 |||||||| ||| ||||||||||| || |||| ||||| ||||| || | ||| Sbjct 2076 GCATTCGCATGCGTGGAGGGCATCTTTTTCTCGGCGAGTTTCTGTGCCATATTCTTGCTG 2135 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 || ||||| ||| | ||||||||||| | ||| |||||| |||| |||| ||||| Sbjct 2136 AAAAAGCGGGGATTGATGCCCGGACTAGCTTTCAGCAACGAGCTTATCGCTCGTGACGAA 2195 Query 125553 GGCCTACACTGTGACTTTGCCATTCTACT 125581 ||| | ||| | || || || |||| || Sbjct 2196 GGCATGCACAGGGATTTCGCGCTTCTGCT 2224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740686419432680