Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq8895 141 7e-29 seq195 140 2e-28 seq12650 98.7 7e-16 >seq8895 Length=8815 Score = 141 bits (156), Expect = 7e-29 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || |||||||| ||||||||||| || | | | ||||||| | |||| Sbjct 782 TGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGCCAGTGTCCGCCCGTCTTCCAGTTGT 723 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| ||||||| | ||||||||| ||| |||||||||||||| ||||||| Sbjct 722 TTGCCCGCGAATATCAATCTTTGTTGGTCAGGTGGGATTCCTTCTTTGTCTTGAATTTTG 663 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || || || || | | ||||| || ||||| ||||| ||||| || Sbjct 662 GCCTTGACGTTGTCAATAGTGTCAGAACTCTCTACCTCCAAGGTGATGGTCTTACCAGTA 603 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || ||||| ||||| || ||||| Sbjct 602 AGCGTTTTCACAAAGATCTGCAT 580 >seq195 Length=29407 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| || | || || | ||| | ||| || ||||||||||| |||||||| | Sbjct 27223 CCTCCTCTTAAACGCAACACGAGATGTAAGGTTGATTCTTTTTGTATATTGTAATCACCC 27164 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | ||||| ||||||| |||||||| || || | ||||| |||||||||||| ||| Sbjct 27163 AATGTTCTCCCGTCTTCCAATTGTTTTCCTGCAAAAATCAATCGTTGTTGGTCGGGTGGC 27104 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || ||||| |||||| | ||||| ||||| | ||| || Sbjct 27103 ATTCCTTCCTTATCCTGGATTTTAGACTTTACGTTATCTATCGTATCTGAAGATTCAACG 27044 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || || ||||||||||| | |||||| | ||| |||||||| Sbjct 27043 TCGAGTGTTATAGTTTTACCTGTTAAAGTTTTGATAAATATTTGCAT 26997 >seq12650 Length=5101 Score = 98.7 bits (108), Expect = 7e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 15218 TGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATT 15277 || || |||||| | || | || |||||||| || |||||||| || || |||| Sbjct 752 TGCTTTCCAGCGAAAATAAGGCGCTGTTGGTCTGGAGGGATTCCTTCCTTATCTTGAATT 693 Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337 ||| ||| || | || || ||||| || | || || || | |||||| ||||| ||| Sbjct 692 TTGGCCTTCACGTTGTCGATAGTATCACTGCTCTCGACTTCAAGGGTAATTGTTTTCCCT 633 Query 15338 GTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 || |||||||| |||||||| ||||||||||| Sbjct 632 GTGAGAGTTTTCACAAAAATCTGCATATTTGA 601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362001565023663