Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq21550 104 2e-17 seq195 89.7 4e-13 seq13311 87.8 1e-12 >seq21550 Length=3044 Score = 104 bits (114), Expect = 2e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || ||||||||||| || ||||| || |||| ||| | ||||| Sbjct 2648 CACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCCAGTGTGCGCCCATCCTC 2589 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || |||||| | || ||||||||||| ||| ||| | |||||||||||| Sbjct 2588 CAGCTGCTTTCCCGCAAAGATCAGTCTCTGCTGGTCCGGGGGGATGCCCTCTTTGTCCTG 2529 Query 18952 AATTTTC 18958 ||||||| Sbjct 2528 AATTTTC 2522 >seq195 Length=29407 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| || | ||||| | || || || || || ||||| ||||||||||| || Sbjct 27223 CCTCCTCTTAAACGCAACACGAGATGTAAGGTTGATTCTTTTTGTATATTGTAATCACCC 27164 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | |||| | |||| |||| ||||| || ||| |||| | || || || || ||| Sbjct 27163 AATGTTCTCCCGTCTTCCAATTGTTTTCCTGCAAAAATCAATCGTTGTTGGTCGGGTGGC 27104 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || || || ||||| ||||| | | | ||||| || || Sbjct 27103 ATTCCTTCCTTATCCTGGATTTTAGACTTTACGTTATCTATCGTATCTGAAGATTCAACG 27044 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| || || |||||||||||||||||||||| ||| |||||||| Sbjct 27043 TCGAGTGTTATAGTTTTACCTGTTAAAGTTTTGATAAATATTTGCAT 26997 >seq13311 Length=4779 Score = 87.8 bits (96), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 18802 ATTTTATTGTTTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAAT 18861 |||||| ||| ||||| || | | | ||||| ||||| ||||||||||| || || Sbjct 4609 ATTTTACTGT---CCTCCACGGAGACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGAT 4665 Query 18862 ATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTG 18921 |||||| || |||| || | ||||||| ||||| || |||||| | ||||| | ||| Sbjct 4666 ATTGTAGTCAGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCAAAGATAAGGCGCTG 4725 Query 18922 CTGATCCACGGGCACGCCCTCTTTGTC 18948 ||| || ||| | ||||| ||||| Sbjct 4726 CTGGTCAGGGGGAATTCCCTCCTTGTC 4752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414369467976742