Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq195 109 3e-19 >seq195 Length=29407 Score = 109 bits (120), Expect = 3e-19 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| |||||||| | ||| || || || ||||||||||||||||||||| Sbjct 27224 ACCTCCTCTTAAACGCAACACGAGATGTAAGGTTGATTCTTTTTGTATATTGTAATCACC 27165 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | ||| |||||||| ||||| ||| || || ||||| ||||| | || Sbjct 27164 CAATGTTCTCCCGTCTTCCAATTGTTTTCCTGCAAAAATCAATCGTTGTTGGTCGGGTGG 27105 Query 33262 TATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || ||||| || || | | | | | ||||| | | ||||| || | || Sbjct 27104 CATTCCTTCCTTATCCTGGATTTTAGAC---TTTACGTTATCTATCGTATCTGAAGATTC 27048 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 |||||| || ||||| ||||| || || | |||||| | || ||||||||| Sbjct 27047 AACGTCGAGTGTTATAGTTTTACCTGTTAAAGTTTTGATAAATATTTGCATG 26996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318621251840214