Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq195 98.7 8e-16 >seq195 Length=29407 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| ||| | |||||| | ||||| || |||||||||||||| |||||||| ||| Sbjct 27223 CCTCCTCTTAAACGCAACACGAGATGTAAGGTTGATTCTTTTTGTATATTGTAATCACCC 27164 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||||||||||| || ||| |||| | | ||||| ||| ||| Sbjct 27163 AATGTTCTCCCGTCTTCCAATTGTTTTCCTGCAAAAATCAATCGTTGTTGGTCGGGTGGC 27104 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| || || ||||| || || | | | | ||| || ||| Sbjct 27103 ATTCCTTCCTTATCCTGGATTTTAGACTTTACGTTATCTATCGTATCTGAAGATTCAACG 27044 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || || ||||| || || || ||||||| ||| |||||||| Sbjct 27043 TCGAGTGTTATAGTTTTACCTGTTAAAGTTTTGATAAATATTTGCAT 26997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419381408606283