Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq30393 156 4e-33 >seq30393 Length=6106 Score = 156 bits (172), Expect = 4e-33 Identities = 476/713 (67%), Gaps = 37/713 (5%) Strand=Plus/Plus Query 12865 ATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCAT 12924 |||||| | |||||||||||||||||||| || ||||| || || ||||||||||| Sbjct 876 ATATTCACCGACTCTTTTTTCAAAAAAGTTAGTCTTTCCATCCAAGCTGATATTTTCCAT 935 Query 12925 AAAATCGAAAGGATTTTTCG----AACAATAGTATTTTTTACACCCTAATTCTAGTAACA 12980 ||||||||| ||||| || | || ||| || | | || |||| | ||| | Sbjct 936 AAAATCGAATGGATTCTTTGTTGCAAAGATAATAGAATAT----CCCAATTGTTTTAATA 991 Query 12981 ATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 13040 ||| || ||||| || || ||||| | |||||| | ||||| || || | | Sbjct 992 ATCGATCTGCAACGAATTCGATGTATTCCGACATTAATTTTTGATTCATACCAATCA-TC 1050 Query 13041 TTACA-GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTC-GATAACTAT 13098 ||| || || | |||||| | ||| | |||||| | | || ||||| |||| | || Sbjct 1051 CGACATGGGATTGATTCTGTGATAAATTCTTTTTCGTTCTGGACAGCTTCAGATA-CGAT 1109 Query 13099 GTCTCT----TATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCAT-ACAT 13153 | | | |||| ||| ||| | || || ||| | | ||| | | ||| Sbjct 1110 AT-TATGGACTATT--GTT-TCTGAAGGTTTCCTTTTTAGGTAATGAAAAAGAGTTACA- 1164 Query 13154 GCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCC 13213 || || || ||||||||||||||||| ||| | ||| || ||||| | ||||| Sbjct 1165 GCGAACTCTTGATGCAATCCTTCATCTCTTGATATCAACTCATTRGAAAAAGAAAGACCG 1224 Query 13214 GGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATT 13273 ||||| || ||||||||||| | ||||||||| ||| || ||||| ||||| | || Sbjct 1225 GGCATCAGACCTCGTTTTTTCAACCAAAATATGGCACAGAAGGAACCAGAAAATAGAATA 1284 Query 13274 CCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATC 13333 ||||| || ||||||||||| || | ||| | ||| ||| |||| | ||| Sbjct 1285 CCTTCCACACACGCAAACGCTATTAAACGTTCTGCGAACGCCGTATCTTTA---TTGATC 1341 Query 13334 CACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAAT 13393 || ||| ||||||| |||||||| | ||| | || | | || || |||||| Sbjct 1342 CATTTTTGAGCCCAGTATGCTTTTTTTGAAACCGAAGGGATGGTGTGAATCGCATTAAAT 1401 Query 13394 AAAT-AAt-ttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTT 13451 | || ||| |||| | | | | | | || || ||||||||||||||| |||| | Sbjct 1402 AGATGAATCTTTTGTGCGTGATTTTT--TATGTATCGATCTATCAATAAGCTGTACA--T 1457 Query 13452 CTGA--ATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATAC 13509 |||| |||||| ||| | | ||| ||| ||||| | ||| |||| | Sbjct 1458 CTGACTGTGAATAGATTCGTTGTATTGTTGATAACTGTAAAAGGCACGAGCTTCTGGAAT 1517 Query 13510 CTGAACTTC-GGAGTAAAATCTTTCT-GCTAAGTTTTCGTTAACTATCCCGTC 13560 || ||||| | ||||| ||||| || | ||||| ||||| ||||| || Sbjct 1518 TTGCACTTCATCACTAAAA--TTTCTGGCGAGATTTTCATTAACAATCCCATC 1568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430771019698686