Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq8895 140 7e-28 seq12187 109 1e-18 seq30393 87.8 4e-12 seq13311 87.8 4e-12 seq9493 86.0 1e-11 >seq8895 Length=8815 Score = 140 bits (154), Expect = 7e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || || | ||| | ||| || || || | ||||||||||| || || || || |||| Sbjct 806 CCTCCACGTAGACGAAGCACGAGGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGCC 747 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || || | |||||||| |||||||| || || || || | || ||||| ||||| || Sbjct 746 AGTGTCCGCCCGTCTTCCAGTTGTTTGCCCGCGAATATCAATCTTTGTTGGTCAGGTGGG 687 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 ||||||||||| || ||||| || || || || || || | || || | |||||| Sbjct 686 ATTCCTTCTTTGTCTTGAATTTTGGCCTTGACGTTGTCAATAGTGTCAGAACTCTCTACC 627 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | || || |||||||||||||| ||||| ||||| |||||||| Sbjct 626 TCCAAGGTGATGGTCTTACCAGTAAGCGTTTTCACAAAGATCTGCAT 580 >seq12187 Length=9842 Score = 109 bits (120), Expect = 1e-18 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| ||||| ||||| | ||||| | ||||| || || || || || Sbjct 9650 GTGGACTCCTTCTGGATATTGTAGTCCGCCAGAGTGCGCCCGTCCTCCAGCTGCTTCCCG 9709 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | || ||| || || ||||| || || || |||||||||||||| || || Sbjct 9710 GCAAAAATCAACCGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGAATCTTGGCCTTC 9769 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || || || | || ||||| || || || ||||| || || || || Sbjct 9770 ACGTTGTCAATAGTGTC-TGAGCTCTCCACCTCCAGCGTGATGGTCTTCCCGGTGAGGGT 9828 Query 104542 TTTTACAAATATCT 104555 |||||| || |||| Sbjct 9829 TTTTACGAAGATCT 9842 >seq30393 Length=6106 Score = 87.8 bits (96), Expect = 4e-12 Identities = 269/411 (65%), Gaps = 12/411 (3%) Strand=Plus/Minus Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCT-GTCAAGAGGTACAGATTCCTGA 268935 ||||| || ||||| |||||||| | |||| || | || | || || || ||||| || Sbjct 1568 GATGGGATTGTTAATGAAAATCTCGCC-AGAAATTTTAGTGATGAAGTGCAAATTCCAGA 1510 Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAG--AGATGTAC 268993 ||| | |||||| | | || | | ||| |||||| ||| |||||||| Sbjct 1509 AGCTCGTGCCTTTTACAGTTATCAACAATACAACGAATCTATTCA--CAGTCAGATGTAC 1452 Query 268994 AGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCT 269053 || |||| |||||| || ||| | || || |||||| |||||| | | Sbjct 1451 AGCTTATTGATAGATCGATACATAAAAAATCACGCACAAAAGATTCATCTATTTAATGCG 1392 Query 269054 ATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAAC--- 269110 || || || | || ||||||| | | ||||||| |||||||| || Sbjct 1391 ATTCACACCATCCCTTCGGTTTCAAAAAAAGCATACTGGGCTCAAAAATGGATCAATAAA 1332 Query 269111 GATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTT 269170 |||| ||| | || |||| | ||| | || ||||| ||| |||||||| | ||| Sbjct 1331 GATACGGCG---TTCGCAGAACGTTTAATAGCGTTTGCGTGTGTGGAAGGTATTCTATTT 1275 Query 269171 TCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACT 269230 || || || || || || ||||||||||| ||| |||| || ||||| || | || Sbjct 1274 TCTGGTTCCTTCTGTGCCATATTTTGGTTGAAAAAACGAGGTCTGATGCCCGGTCTTTCT 1215 Query 269231 TTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCT 269281 || || || || |||||| || || ||||| || || || |||||| Sbjct 1214 TTTTCYAATGAGTTGATATCAAGAGATGAAGGATTGCATCAAGAGTTCGCT 1164 >seq13311 Length=4779 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| ||||| ||||||| || || | ||||| || || || || || Sbjct 4649 GTAGACTCCTTCTGGATATTGTAGTCAGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCC 4708 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || ||||| || ||||| || || ||||||||||| || || Sbjct 4709 GCAAAGATAAGGCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGCCTTC 4768 Query 104483 ACATTTTC 104490 || || || Sbjct 4769 ACGTTGTC 4776 >seq9493 Length=6168 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| || ||||||||||| || || ||||| || | |||||| || || ||||| Sbjct 1050 CCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATAGTATCGGAAGACTCCACCTCA 991 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || ||||||||||| || || || || ||||| |||||||| || Sbjct 990 AGGGTGATAGTCTTACCCGTGAGGGTCTTCACAAAAATCTGCATATT 944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150804723513044