Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq8895 136 4e-27 seq12187 105 6e-18 seq21550 98.7 9e-16 seq12650 89.7 5e-13 >seq8895 Length=8815 Score = 136 bits (150), Expect = 4e-27 Identities = 159/213 (75%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCC 94855 ||| | ||| | ||||||||| ||||| | ||| ||||| || |||| | || Sbjct 789 CACGAGGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGCCA--GTGTCCGCCCGTCT 732 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 ||||| ||||| || | || || |||||||| || || || || || ||||||||||| Sbjct 731 TCCAGTTGTTTGCCCGCGAATATCAATCTTTGTTGGTCAGGTGGGATTCCTTCTTTGTCT 672 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | |||||| ||||||||| | | | |||||||| || || || | |||||||| Sbjct 671 TGAATTTTGGCCTTGACGTTGTCAATAGTGTCAGAACTCTCTACCTCCAAGGTGATGGTC 612 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || |||||||| ||||||||||||||||||||| Sbjct 611 TTACCAGTAAGCGTTTTCACAAAGATCTGCATG 579 >seq12187 Length=9842 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | || |||| ||||||||||| || || ||||| || | || || || | Sbjct 9620 CCTCCACGCAGGCGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCC 9679 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| ||||||||||| || ||| |||| || || | ||||| || ||||| Sbjct 9680 AGAGTGCGCCCGTCCTCCAGCTGCTTCCCGGCAAAAATCAACCGCTGCTGGTCGGGAGGG 9739 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || || || | ||| || ||||| ||| | | | |||||| | | || || Sbjct 9740 ATGCCCTCCTTATCCTGAATCTTGGCCTTCACGTTGTCAATAGTGTCTGAGCTCTCCACC 9799 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCT 95003 || | ||||||||| || || || || ||||| || ||||||| Sbjct 9800 TCCAGCGTGATGGTCTTCCCGGTGAGGGTTTTTACGAAGATCT 9842 >seq21550 Length=3044 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| || || |||||||| | ||| || || || ||| | Sbjct 2653 CGCAGCACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCCAGTGTGCGCCCA 2594 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| ||||| ||||||| | ||| ||||| || || || || || |||||| Sbjct 2593 TCCTCCAGCTGCTTTCCCGCAAAGATCAGTCTCTGCTGGTCCGGGGGGATGCCCTCTTTG 2534 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC-GACGTCAATCGTGAT 94971 || | |||||| ||||| | | | | |||||| | || | ||||| | ||||| Sbjct 2533 TCCTGAATTTTCGCCTTTAACTCCTCAATCGTGTCA-CTAGGACACACGTCCAAAGTGAT 2475 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| ||||| || || || || | || | |||||| Sbjct 2474 GGTCTTTCCGGTGAGTGTCTTGATGAAAAGCTGCAT 2439 >seq12650 Length=5101 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || || |||||||| || ||||| || || | |||||| ||||| ||| | ||| ||| Sbjct 728 TGTTGGTCTGGAGGGATTCCTTCCTTATCTTGAATTTTGGCCTTCACGTTGTCGATAGTA 669 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 ||| | ||||| |||| || || ||||| || || |||||||||||||| |||||| Sbjct 668 TCACTGCTCTCGACTTCAAGGGTAATTGTTTTCCCTGTGAGAGTTTTCACAAAAATCTGC 609 Query 95006 AT 95007 || Sbjct 608 AT 607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448065692715480