Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq16837 141 1e-29 seq14416 136 6e-28 seq8393 132 8e-27 seq10748 129 9e-26 seq22063 118 2e-22 seq15380 118 2e-22 >seq16837 Length=8416 Score = 141 bits (156), Expect = 1e-29 Identities = 188/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| || || || || |||||||||||||||||||| || || Sbjct 1160 CGCCAAGCGTCACCGCAAGGTGCTCCGCGACAATATCCAAGGAATCACCAAGCCCGCGAT 1219 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| |||| || || ||||| || |||||| || || | ||||||| |||| Sbjct 1220 CCGCCGTTTGGCCCGCCGCGGTGGCGTTAAGCGTATCAGCGGTCTCATCTATGAGGAGAC 1279 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| |||||| | ||||| ||| ||| |||| || || | ||| ||||| Sbjct 1280 CCGCGGTGTCTTGAAGGTATTCCTGGAGAACGTCATCCGCGACGCCGTGACCTACACCGA 1339 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| || || || |||||||| | || ||||| | ||||| || || Sbjct 1340 GCACGCCCGTCGTAAAACAGTGACGGCCATGGATGTTGTGTATGCCCTCAAACGCCAGGG 1399 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 |||| | ||||| || || Sbjct 1400 GCGTACCCTCTATGGCTTCGG 1420 >seq14416 Length=4552 Score = 136 bits (150), Expect = 6e-28 Identities = 191/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || ||||| |||| || || || |||||||| || ||||||||||| || || Sbjct 3635 CGCCAAACGTCACCGCAAGGTGCTCCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 3576 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||| ||||||||||| || ||||| || || | | || || |||| Sbjct 3575 CCGCCGCTTGGCCCGTCGTGGTGGCGTGAAGCGCATCAGCGGTCTCATTTACGAGGAGAC 3516 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| |||||| | ||||| ||| |||||||| |||||| | ||| || || Sbjct 3515 CCGCGGTGTCTTGAAGGTATTCCTTGAGAACGTTATCCGTGATGCCGTGACCTACACTGA 3456 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| || ||| ||||||| |||| ||||| | || || || || Sbjct 3455 GCACGCTCGCCGCAAGACCGTGACCGCCATGGACGTCGTGTATGCTCTCAAGCGCCAGGG 3396 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | ||||| || || ||||| Sbjct 3395 ACGCACCCTGTATGGCTTCGGCGGTTAA 3368 >seq8393 Length=6707 Score = 132 bits (146), Expect = 8e-27 Identities = 190/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| || || ||||||||||| || || |||||||| || || Sbjct 1689 CGCCAAGCGTCATCGCAAGGTGCTGCGTGATAACATCCAGGGTATTACCAAGCCCGCCAT 1748 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| |||||||| |||||||| | || | ||||||| |||| Sbjct 1749 CCGCCGTCTGGCTCGCCGTGGTGGCGTCAAGCGCATTAGCGGCCTCATCTATGAGGAGAC 1808 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | || || ||| |||||||| ||| ||| | || || || Sbjct 1809 CCGCGGTGTCCTGAAGGTGTTTCTTGAGAACGTTATCCGTGACGCTGTGACGTACACTGA 1868 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| || || | ||||| | || || || | || || || || Sbjct 1869 GCACGCCCGCCGCAAGACCGTGACTGCAATGGACGTGGTGTACGCCCTTAAGCGCCAGGG 1928 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || ||||| ||||| Sbjct 1929 CCGCACCCTGTACGGCTTTGGGGGTTAA 1956 >seq10748 Length=5862 Score = 129 bits (142), Expect = 9e-26 Identities = 191/271 (70%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| || || || |||||||| || |||||||| || || || Sbjct 4402 CGCCAAGCGTCACCGCAAGGTGCTCCGTGACAACATCCAGGGTATCACCAAACCCGCGAT 4343 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||| ||||||||||| || ||||| || || | | || || |||| Sbjct 4342 TCGCCGCTTGGCCCGTCGTGGTGGTGTGAAGCGCATCAGCGGTCTCATTTACGAGGAGAC 4283 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||||| | ||||| ||| |||||||| |||||| | ||| || || Sbjct 4282 CCGCGGCGTCTTGAAGGTGTTCCTTGAGAACGTTATCCGTGATGCCGTGACCTACACTGA 4223 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || |||||||| || ||||||| | || ||||| | || || || || Sbjct 4222 GCACGCTCGCCGCAAGACTGTGACTGCCATGGACGTTGTATATGCCCTTAAGCGCCAGGG 4163 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | |||| || || || ||||| || Sbjct 4162 ACGCACGCTTTACGGCTTCGGCGGTTAAGCT 4132 >seq22063 Length=6795 Score = 118 bits (130), Expect = 2e-22 Identities = 188/270 (70%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| || || || |||||||| || ||||||||||| || || Sbjct 5991 GCCAAGCGTCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCTGCCATT 5932 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||| ||||||||||| || ||||| || || | |||| || |||| Sbjct 5931 CGCCGTTTGGCCCGTCGTGGTGGCGTGAAGCGCATCAGCGGTCTCATCTACGAGGAGACC 5872 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| |||||| | ||||| ||| || || | |||||| | |||||| ||| Sbjct 5871 CGCGGTGTCTTGAAGGTGTTCCTGGAGAATGTCATTCGCGATGCTGTAACCTATACTGAG 5812 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || |||||||| ||| | ||||| | || || || | || || || || Sbjct 5811 CACGCCCGCCGCAAGACTGTGACCGCTATGGACGTTGTGTACGCTCTCAAGCGCCAGGGA 5752 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | || || || || ||||| || Sbjct 5751 CGCACCCTGTACGGCTTCGGCGGTTAAGCT 5722 >seq15380 Length=6711 Score = 118 bits (130), Expect = 2e-22 Identities = 188/270 (70%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| || || || |||||||| || ||||||||||| || || Sbjct 1751 GCCAAGCGTCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCATT 1692 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||| ||||||||||| || ||||| || || | |||| || |||| Sbjct 1691 CGCCGCTTGGCCCGTCGTGGTGGCGTGAAGCGCATCAGCGGTCTCATCTACGAGGAGACC 1632 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| |||||| | ||||| ||| |||||| | |||||| | ||| || ||| Sbjct 1631 CGCGGTGTCTTGAAGGTGTTCCTGGAGAACGTTATTCGAGATGCTGTAACCTACACTGAG 1572 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || |||||||| ||| | ||||| | || || || | || || || || Sbjct 1571 CACGCCCGCCGCAAGACTGTGACCGCTATGGACGTTGTGTACGCTCTCAAGCGCCAGGGA 1512 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | || || || || ||||| || Sbjct 1511 CGCACCCTGTACGGCTTCGGCGGTTAAGCT 1482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79038405543399