Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq30393 145 8e-30 >seq30393 Length=6106 Score = 145 bits (160), Expect = 8e-30 Identities = 383/574 (67%), Gaps = 25/574 (4%) Strand=Plus/Plus Query 21169 TGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCC 21228 || ||||| ||| ||| ||| |||| ||||||||||| ||||| || |||||||| Sbjct 855 TGCCATAACTCCAGCTTTCGCATATTCACCGACTCTTTTTTCAAAAAAGTTAGTCTTTCC 914 Query 21229 TTCCAA--TGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTA 21286 ||||| |||||| |||||||||||| |||||||| | | | ||| || || | Sbjct 915 ATCCAAGCTGATAT--TTTCCATAAAATCGAATGGATTCTTTGTTGCAAAGATAATAGAA 972 Query 21287 CAACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCA 21346 | |||| || | |||||||| |||||| || ||||| || |||| ||||||||| Sbjct 973 TATCCCAATTGTTTTAATAATCGATCTGCAACGAATTCGATGTATTCCGACATTAATTTT 1032 Query 21347 CAATTCATACCGATCAATTTTACA-GGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGA 21405 ||||||||| ||| || ||| || | | || ||| | ||| |||||| | Sbjct 1033 TGATTCATACCAATC-ATCCGACATGGGATTGATTCTGTGATAAATTCTTTTTCGTTCTG 1091 Query 21406 GACGGCTTCA---ACAATTATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTG 21462 ||| |||||| || || ||| | ||| ||| | || | | | | | Sbjct 1092 GACAGCTTCAGATACGATATTATGGACTAT------TGTTTCTGAAGGTTTCCTTTTTAG 1145 Query 21463 TT--TAAACATCA--AACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATT 21518 | | || | | ||| || || || |||||| |||||||| || ||| || | Sbjct 1146 GTAATGAAAAAGAGTTACA-GCGAACTCTTGATGCAATCCTTCATCTCTTGATATCAACT 1204 Query 21519 CATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA- 21577 |||| ||||| | | ||||||||| | |||| ||||| |||||||||| || | || Sbjct 1205 CATTRGAAAAAGAAAGACCGGGCATCAGACCTCGTTTTTTCAACCAAAATA-TGGCACAG 1263 Query 21578 AATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTAT 21637 || | || ||||| | ||| || || || ||||| || | ||| ||||| || | Sbjct 1264 AAGGAACCAGAAAATAGAATACCTTCCACACACGCAAACGCTATTAAACGTTCTGCGAAC 1323 Query 21638 GTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCA 21697 | | ||||||| |||||||||| ||||| | ||| |||| | || || Sbjct 1324 GCCGTATCTTTAT---TGATCCATTTTTGAGCCCAGTATGCTTTTTTTGAAACCGAAGGG 1380 Query 21698 ATTGTATCAATAGCTTTTAAAAGATGAttttttt 21731 || || | ||| || || || |||||| | |||| Sbjct 1381 ATGGTGTGAATCGCATTAAATAGATGAATCTTTT 1414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531633233951320