Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq161 87.8 2e-12 seq8895 82.4 7e-11 >seq161 Length=48699 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 71720 GGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAA 71779 || || || ||||||| | | |||||||||||||| || || || ||||| ||||| Sbjct 37453 GGCAAGATGCACGGATTCATGCGCATGTACTGGGCGAAGAAAATCCTCGAATGGACAGCG 37394 Query 71780 ACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATA-CAGTCTCGACGG 71838 | || ||||| |||||||||||| | || || || ||||||| || ||| || ||||| Sbjct 37393 AGCCCGGAGCAAGCGCTCGAGTATGCCATCTACCTCAACGATAAGTATCAG-CTGGACGG 37335 Query 71839 TCGCGATCCTAACGG 71853 || || || ||||| Sbjct 37334 CCGTGACCCGAACGG 37320 >seq8895 Length=8815 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 26763 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA 26822 |||| ||||| | ||||| ||||| | ||||| || | |||||| | || |||| Sbjct 574 AACACCATGCAGATCTTTGTGAAAACGCTTACTGGTAAGACCATCACCTTGGAGGTAGAG 633 Query 26823 TCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCC 26882 ||||| || || | ||||| || ||| ||||||||||| || || || Sbjct 634 AGTTCTGACACTATTGACAACGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCACCT 693 Query 26883 GATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGAC 26942 || ||||||||| | || | || ||||||||||| ||||| | | | | || Sbjct 694 GACCAACAAAGATTGATATTCGCGGGCAAACAACTGGAAGACGGGCGGACACTGGCTGAT 753 Query 26943 TATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| ||||||||||||||| | || || || || Sbjct 754 TACAACATCCAAAAAGAATCTACTCTTCACCTCGTGCT 791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478421614862960