Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq7861 136 1e-26 >seq7861 Length=6948 Score = 136 bits (150), Expect = 1e-26 Identities = 278/408 (68%), Gaps = 4/408 (1%) Strand=Plus/Minus Query 364732 CGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAAC 364791 |||||||||||| | || |||||||||||||| || || | |||||||| || ||| Sbjct 3007 CGCAACTCCCTCCTCGTGGCTCCCATGCCCACGGCCTCCACCTCGCAGATCCTGGGCAAC 2948 Query 364792 AACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAA 364851 |||||||||||||| || | |||||||| | ||| | || |||| || ||| || Sbjct 2947 AACGAGTGCTTCGAGCCTTACACAAGCAACATCTATGCCCGGAGGGTGCTGAGCGGCGAG 2888 Query 364852 TTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGAC 364911 || | || || || || || | |||| || | | |||| || || ||| || | Sbjct 2887 TTCACCGTGGTGAACCAGCACTTGCTCAACGACTTGACAGACCTAGGCCTTTGGAATG-C 2829 Query 364912 AG-CATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCC 364970 || |||||||||| | | ||||| || || ||||||||||| || | || Sbjct 2828 AGACATGAAGAACATTCTAATCGCGCACAACGGCAGCGTGCAGAACATCCCTAACATCCC 2769 Query 364971 AGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGA 365030 || || || || | | | ||||| || || |||||||| |||||| ||| | || Sbjct 2768 CGATGACCTTAAACGTCTGTACAAGACAGTGTGGGAAATCAAACAGCGAACACTCGTAGA 2709 Query 365031 TATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGAC 365090 ||| | || || | ||||| || || ||||||||| |||||||| |||||| Sbjct 2708 CATGTCTGCTGACAGAGGTGCCTTCATTGACCAGAGCCAGAGCTTTAACGTGCACATGAC 2649 Query 365091 TCA-GCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGA 365137 | | ||||| || || ||||| || |||| ||| | | ||||| Sbjct 2648 TGATGCCAA-CTTCGGAAAGCTGACCAGTCTGCACTTCCATGCGTGGA 2602 Score = 111 bits (122), Expect = 4e-19 Identities = 171/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 363621 AATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTC 363680 |||||| ||||| ||||| ||||||| ||||| || ||| | |||||| ||||| Sbjct 4883 AATGAAAGACGACAGTATCGAAGGTATCTACGACACGCTGAAGGAGTGTGCTGCAATTTC 4824 Query 363681 CAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACAT 363740 |||| || || || || || | ||||| || | ||| | | |||||||| Sbjct 4823 AAAGAGCGCCGGAGGGATCGGCCTCAACATCCATAACATCCGTTCTACCAGTAGTTACAT 4764 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| ||||| ||| |||||| || | || || ||||||||||| || || | || Sbjct 4763 TCGGGGCACCAACGGAACCTCGAACGGCATCGTCCCTATGCTTCGTGTCTTCAACGACAC 4704 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGA 363860 ||| | || ||||| |||||||| |||||||| || || || || || || || || || Sbjct 4703 TGCCCGCTATGTCGATCAGGGTGGTGGAAAGCGAAAGGGTGCTTTCGCCATCTACCTTGA 4644 Query 363861 GCCT 363864 ||| Sbjct 4643 ACCT 4640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302681573370026