Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq8895 93.3 4e-14 >seq8895 Length=8815 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/201 (72%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAA--ACGGAGTCCA 115343 ||||| || ||||| |||||||| || || || ||||| ||| | || | |||| | Sbjct 580 ATGCAGATCTTTGTGAAAACGCTTACTGGTAAGACCATCACCTTGGAGGTAGAGAGTTCT 639 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | ||||| ||| |||| || || |||||| || |||||||| |||| ||| Sbjct 640 G--ACACTATTG-ACAACGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCACCTGAC 696 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || |||||| | || | |||||||||||| | ||||| | || |||| ||||| Sbjct 697 CAACAAAGATTGATATTCGCGGGCAAACAACTGGAAGACGGGCGGACACTGGCTGATTAC 756 Query 115463 AACATTCAAAAAGAGTCTACT 115483 ||||| |||||||| |||||| Sbjct 757 AACATCCAAAAAGAATCTACT 777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425135385117160