Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1570 114 1e-20 seq21550 113 4e-20 seq12187 104 2e-17 seq17433 98.7 9e-16 seq8895 96.9 3e-15 seq18016 95.1 1e-14 seq13311 93.3 4e-14 seq12650 87.8 2e-12 seq26458 82.4 7e-11 >seq1570 Length=19022 Score = 114 bits (126), Expect = 1e-20 Identities = 152/206 (74%), Gaps = 5/206 (2%) Strand=Plus/Minus Query 46088 CGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTT 46147 |||||||| |||||| || |||||| | || ||| | ||| || || ||| Sbjct 12286 CGTGCGTGAAGCGGAAAACGGAATGGGCGCAGCGGTACATCGAAAGC--CAGAGCAGCTT 12229 Query 46148 TCGC-CGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTT 46206 | | |||| || || |||| |||||| || |||||| | ||||| || | ||||||| Sbjct 12228 TTCCACGAG-GT-TGTTGGCTTTTGCGTGCGTCGAGGGCATATTTTTCTCCGCCAGTTTT 12171 Query 46207 GCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAG 46266 ||||||||||||||| |||| |||| | |||||||| ||| |||| ||||||||| Sbjct 12170 TGCGCCATCTTTTACATGAAAAAGCAGGGGCTGATGCCCGGTCTGTCGTTCAGCAACGAG 12111 Query 46267 CTGATATCGCGCGACGAGGGCCTGCA 46292 || || |||||||||| ||| |||| Sbjct 12110 CTCATCGCGCGCGACGAAGGCATGCA 12085 >seq21550 Length=3044 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 |||||||| | || | ||| ||||||||||| |||||||| || || |||||| Sbjct 2653 CGCAGCACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCCAGTGTGCGCCCA 2594 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| |||||||| || || |||| | | |||||||||||| ||||| || |||||| Sbjct 2593 TCCTCCAGCTGCTTTCCCGCAAAGATCAGTCTCTGCTGGTCCGGGGGGATGCCCTCTTTG 2534 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGT-GGACTCGATGTCGACGGTAAC 131198 || |||||| ||| | || ||| | || || | |||| | | ||| | || | Sbjct 2533 TCCTGAATTTTCGCCTTTAACTCCTCAATCGTGTCACTAGGACAC-ACGTCCAAAGTGAT 2475 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || ||||| || || || | ||||| |||||| Sbjct 2474 GGTCTTTCCGGTGAGTGTCTTGATGAAAAGCTGCAT 2439 >seq12187 Length=9842 Score = 104 bits (114), Expect = 2e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 |||| || |||| |||||||| || || | || |||||||| || || ||||| || Sbjct 9618 AGCCTCCACGCAGGCGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCG 9677 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || |||||| |||||| |||||||| || || | || || ||||||||||| |||| Sbjct 9678 CCAGAGTGCGCCCGTCCTCCAGCTGCTTCCCGGCAAAAATCAACCGCTGCTGGTCGGGAG 9737 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| || || || || || || ||| | | || | ||| || | | ||| | Sbjct 9738 GGATGCCCTCCTTATCCTGAATCTTGGCCTTCACGTTGTCAATAGTGTCTGAGCTCTCCA 9797 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCT 131230 || | || | ||| || ||||| || ||||||||||| |||| Sbjct 9798 CCTCCAGCGTGATGGTCTTCCCGGTGAGGGTTTTTACGAAGATCT 9842 >seq17433 Length=6093 Score = 98.7 bits (108), Expect = 9e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||| ||||| || || | ||| |||||||| || ||||||||||| Sbjct 2946 GCCACCACGCAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGC 2887 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| |||||| |||||||| || ||| | || | |||||||| || ||||| Sbjct 2886 AAGAGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGATCAGGAGG 2827 Query 131127 GATTCCT 131133 ||||||| Sbjct 2826 GATTCCT 2820 >seq8895 Length=8815 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| ||||| | || | || || || ||||| ||||||||||| | Sbjct 806 CCTCCACGTAGACGAAGCACGAGGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGCC 747 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || ||| ||| || || || ||||| ||| | || || | || ||||| || ||| Sbjct 746 AGTGTCCGCCCGTCTTCCAGTTGTTTGCCCGCGAATATCAATCTTTGTTGGTCAGGTGGG 687 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||||||||| ||||| ||||| | || | ||| || | ||| | Sbjct 686 ATTCCTTCTTTGTCTTGAATTTTGGCCTTGACGTTGTCAATAGTGTCAGAACTCTCTACC 627 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| ||||| || || ||||| || || ||||||||| Sbjct 626 TCCAAGGTGATGGTCTTACCAGTAAGCGTTTTCACAAAGATCTGCATG 579 >seq18016 Length=3756 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| ||||| || || | ||| ||||||||||| || ||||| || Sbjct 91 CCTCCKCGGAGACGGAGCACCAAGTGCAGGGTGGACTCCTTTTGGATATTGTAGTCAGCG 150 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || || Sbjct 151 AGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCAGGTGGA 210 Query 131128 ATTCCT 131133 |||||| Sbjct 211 ATTCCT 216 >seq13311 Length=4779 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| ||||| || || | ||| |||||||| || || ||||| || | Sbjct 4619 CCTCCACGGAGACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCAGCC 4678 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 4679 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCAAAGATAAGGCGCTGCTGGTCAGGGGGA 4738 Query 131128 ATTCCTTCTTTGTC 131141 ||||| || ||||| Sbjct 4739 ATTCCCTCCTTGTC 4752 >seq12650 Length=5101 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 131084 CTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGG 131143 ||| |||||| || ||| | || | ||||| ||||| |||||||||||||| || || Sbjct 757 CTACCTGCTTTCCAGCGAAAATAAGGCGCTGTTGGTCTGGAGGGATTCCTTCCTTATCTT 698 Query 131144 TGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTT 131203 ||||| ||| | | || | |||||| || ||||| || | ||||| |||| Sbjct 697 GAATTTTGGCCTTCACGTTGTCGATAGTATCACTGCTCTCGACTTCAAGGGTAATTGTTT 638 Query 131204 TACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || || |||||||| || ||||||||||| Sbjct 637 TCCCTGTGAGAGTTTTCACAAAAATCTGCAT 607 >seq26458 Length=3991 Score = 82.4 bits (90), Expect = 7e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 |||||||||||| |||||||| | || | || |||||||| || || ||||| || Sbjct 2096 AGCCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCAG 2037 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| |||||| || ||||| || ||| | || | ||||||||||| |||| Sbjct 2036 CGAGCGTGCGACCGTCCTCCAGTTGCTTCCCCGCGAAAATCAGGCGCTGCTGGTCGGGAG 1977 Query 131126 GGATTCCTTC 131135 |||| || || Sbjct 1976 GGATGCCCTC 1967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471775359861120