Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq12187 114 1e-20 seq21550 113 4e-20 seq8895 89.7 4e-13 seq26458 82.4 6e-11 >seq12187 Length=9842 Score = 114 bits (126), Expect = 1e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| ||||||||||||||||| || || |||||||| ||| Sbjct 9620 CCTCCACGCAGGCGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCC 9679 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||||| || || || ||| |||| | |||||| ||||| ||| Sbjct 9680 AGAGTGCGCCCGTCCTCCAGCTGCTTCCCGGCAAAAATCAACCGCTGCTGGTCGGGAGGG 9739 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| || || ||| | |||||| | | | | |||||| | |||| Sbjct 9740 ATGCCCTCCTTATCCTGAATCTTGGCCTTCACGTTGTCAATAGTGTCTGAGCTCTCCACC 9799 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCT 16931 |||| |||||||| || ||||| || ||||| || || |||| Sbjct 9800 TCCAGCGTGATGGTCTTCCCGGTGAGGGTTTTTACGAAGATCT 9842 >seq21550 Length=3044 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| |||||||||||||| ||||||||||| ||| Sbjct 2665 CCCCCACGGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCC 2606 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||| || || |||||| | || || | ||| |||||| || Sbjct 2605 AGTGTGCGCCCATCCTCCAGCTGCTTTCCCGCAAAGATCAGTCTCTGCTGGTCCGGGGGG 2546 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||||||||| ||||| | ||| | || | | ||||| | || | Sbjct 2545 ATGCCCTCTTTGTCCTGAATTTTCGCCTTTAACTCCTCAATCGTGTCACTAGGACACACG 2486 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| |||||||| || || |||| |||| |||||| Sbjct 2485 TCCAAAGTGATGGTCTTTCCGGTGAGTGTCTTGATGAAAAGCTGCAT 2439 >seq8895 Length=8815 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| ||||| | || || | || || || || || ||||| |||||||| || ||| Sbjct 806 CCTCCACGTAGACGAAGCACGAGGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGCC 747 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || |||| |||| |||||||||||| | || | | |||||||| || Sbjct 746 AGTGTCCGCCCGTCTTCCAGTTGTTTGCCCGCGAATATCAATCTTTGTTGGTCAGGTGGG 687 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || |||||||| ||||| ||| || | | | | |||||| ||| Sbjct 686 ATTCCTTCTTTGTCTTGAATTTTGGCCTTGACGTTGTCAATAGTGTCAGAACTCTCTACC 627 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || || |||||||| ||||| |||||||| Sbjct 626 TCCAAGGTGATGGTCTTACCAGTAAGCGTTTTCACAAAGATCTGCAT 580 >seq26458 Length=3991 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||||||||||||||| || || |||||||| || Sbjct 2094 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCAGCG 2035 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||||| ||| || ||||| |||| || ||||| ||||| ||| Sbjct 2034 AGCGTGCGACCGTCCTCCAGTTGCTTCCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGG 1975 Query 16829 ACGCCCTC 16836 | |||||| Sbjct 1974 ATGCCCTC 1967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404889319906570