Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq195 125 5e-24 seq7491 107 1e-18 seq8895 95.1 8e-15 >seq195 Length=29407 Score = 125 bits (138), Expect = 5e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATG-AAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 |||| ||||| ||||||||||| | ||| ||| || | || ||||| |||||||||||| Sbjct 27225 TACCTCCTCTTAAACGCAACACGAGATGTAAGGTTGAT-TCTTTTTGTATATTGTAATCA 27167 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 ||| | |||| || ||||||||||| ||||| || | |||||||| |||| Sbjct 27166 CCCAATGTTCTCCCGTCTTCCAATTGTTTTCCTGCAAAAATCAATCGTTGTTGGTCGGGT 27107 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | ||||| || ||| ||||| ||| || || | | |||||| | |||| Sbjct 27106 GGCATTCCTTCCTTATCCTGGATTTTAGACTTTACGTTATCTATCGTATCTGAAGATTCA 27047 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || | ||| ||||||||||| || || ||||| | ||||| |||||| Sbjct 27046 ACGTCGAGTGTTATAGTTTTACCTGTTAAAGTTTTGATAAATATTTGCATG 26996 >seq7491 Length=7167 Score = 107 bits (118), Expect = 1e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 6200 GTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTAT 6259 |||||| || || |||||||||| |||| ||| | ||||| |||||| ||||| Sbjct 4989 GTTCTATCGGTATAAAATGCCGCCCATCCAGAGTAAGATAGAGGGACGGGGAAATGGTAT 4930 Query 6260 TAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTA 6319 ||||| | | || || ||| ||| || || ||||| |||| |||||| | | || Sbjct 4929 CAAAACAAACGTCGTGAATATGGTTGACGTTGCAAAGGCCCTCGCACGCCCACCTTCATA 4870 Query 6320 CCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGAT 6368 | |||| ||||||||||| ||||| ||||| |||||| | |||||||| Sbjct 4869 CACGACAAAATATTTCGGCTGCGAGCTTGGAGCTCAGTCCAAGTTTGAT 4821 >seq8895 Length=8815 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| | ||| | |||||||| || ||||| || |||||||||| || || | Sbjct 795 ACGAAGCACGAGGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGCCAGTGTCCGCCC 736 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 ||| || | |||||| || || ||||| | | |||||| || | |||| |||||||| Sbjct 735 GTCTTCCAGTTGTTTGCCCGCGAATATCAATCTTTGTTGGTCAGGTGGGATTCCTTCTTT 676 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 ||| |||||| ||| || || | | ||| || ||| || || || || || || Sbjct 675 GTCTTGAATTTTGGCCTTGACGTTGTCAATAGTGTCAGAACTCTCTACCTCCAAGGTGAT 616 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || ||||| || | |||||||| || ||||||||| Sbjct 615 GGTCTTACCAGTAAGCGTTTTCACAAAGATCTGCATG 579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334782921272933