Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq30393 98.7 1e-15 seq319 86.0 8e-12 >seq30393 Length=6106 Score = 98.7 bits (108), Expect = 1e-15 Identities = 376/580 (65%), Gaps = 10/580 (2%) Strand=Plus/Plus Query 32697 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 32756 || || || || ||||| | || |||||||| || || || ||||| | |||||||||| Sbjct 1198 ATCAACTCATTRGAAAAAGAAAGACCGGGCATCAGACCTCGTTTTTTCAACCAAAATATG 1257 Query 32757 GACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC 32815 | | || || || |||||||| | ||| ||||| || |||||| || || | | || Sbjct 1258 G-CACAGAAGGAACCAGAAAATAGAATACCTTCCACACACGCAAACGCTATTAAACGTTC 1316 Query 32816 T-CCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACAC 32874 | | | ||| || | || ||||| ||||||||||| | || || ||| || Sbjct 1317 TGCGAACGCCGTATCT-TTATTGATCCATTTTTGAGCCCAGTATGCTTTTTTTGAAACCG 1375 Query 32875 AAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATG 32934 |||| || || | || |||||||| |||| | |||| || ||| | ||| Sbjct 1376 AAGGGATGGTGTGAATCGCATTAAATAGATGAATCTTTTGTGCGTGATTTTTTATGTATC 1435 Query 32935 TATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGT 32994 ||| ||||| | || ||||| | ||||| ||| || |||| | | || Sbjct 1436 GATCTATCAATAAGCTGTACATCTGACTGTGAATAGATTCGTTGTATTGTTGATAACTGT 1495 Query 32995 AGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTAC-AAAATCGTTCT-GCTAAATTTTC 33052 | ||| | ||| || | ||| || ||||| || ||||| |||| || | |||||| Sbjct 1496 AAAAGGCACGAGCTTCTGGAATTTGCACTTCATCACTAAAAT--TTCTGGCGAGATTTTC 1553 Query 33053 ATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC 33112 ||| || || || || |||| || || ||||||| || |||| ||| ||| ||| Sbjct 1554 ATTAACAATCCCATCGGACCCTGCGAAGAATGCCAATATATTGCTTATGAAAAATTGTTC 1613 Query 33113 -GTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTG 33171 | | || | | | ||||||| | || || || | || ||||| || | Sbjct 1614 AGAGTCGTCCAACGAT-TCCCAATCAGCGTCGTCCTTTGAAAAGTCTACTTCGGTAACCG 1672 Query 33172 TCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAA 33231 |||| || || ||||||| | ||| | | | || |||||||||| || | Sbjct 1673 TCCAGAAACTCGCTATAGCCTTTTCAAACAAGGTATATAAATCGKGATATTGAATAGGGA 1732 Query 33232 AAATAACAAATCTATTTGGATTTTTTGCAAGGATTGGTTC 33271 | | ||| ||| ||||||||||| ||||| ||||| Sbjct 1733 ATAATACATATCGATTTGGATTTTCAATTAGGATAGGTTC 1772 >seq319 Length=35189 Score = 86.0 bits (94), Expect = 8e-12 Identities = 77/96 (80%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || |||||||| || |||||||||| |||||||||||| || |||||||| Sbjct 33476 CAGGCAAAGTCGCAGTGGAGTCCCTCGTCTCGGGAAATTAATTCGTTAGAGAACGTGAGC 33535 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCA--AAATA 32754 |||||||||| ||||| || || ||||| ||||| Sbjct 33536 CCGGGCATTAATCCACGTTTCTTCAGCCAGTAAATA 33571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633313259342800