Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015-
08-05] 40,243 sequences; 281,270,454 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq195 145 7e-30
seq8895 123 2e-23
seq12187 100 2e-16
>seq195
Length=29407
Score = 145 bits (160), Expect = 7e-30
Identities = 174/234 (74%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||||||| | || ||||| || |||||| | || ||| |||| || || || ||
Sbjct 26997 ATGCAAATATTTATCAAAACTTTAACAGGTAAAACTATAACACTCGACGTTGAATCTTCA 27056
Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || || | || | ||| |||||| || || ||||| || ||||| |||||
Sbjct 27057 GATACGATAGA-TAACGTAAAGTCTAAAATCCAGGATAAGGAAGGAATGCCACCCGACCA 27115
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | |||||||| || |||||||| ||||| | | || |||| ||||||||
Sbjct 27116 ACAACGATTGATTTTTGCAGGAAAACAATTGGAAGACGGGAGAACATTGGGTGATTACAA 27175
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231
||| ||||||||||| || ||||| | ||| | | |||||||||| | |||
Sbjct 27176 TATACAAAAAGAATCAACCTTACATCTCGTGTTGCGTTTAAGAGGAGGTATTTA 27229
>seq8895
Length=8815
Score = 123 bits (136), Expect = 2e-23
Identities = 169/234 (72%), Gaps = 8/234 (3%)
Strand=Plus/Plus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|| ||||| || ||||| || || | || ||||| ||||||| | || || |||
Sbjct 577 ACCATGCAGATCTTTGTGAAAACGCTTACTGGTAAGACCATCACCTTGGAGGTAGAGAGT 636
Query 25056 TCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111
||||||||||| || |||| | || |||| ||| ||||||||||| || |||||
Sbjct 637 TCTGACACTATTGACAACGTCA---AGGCCAAAATTCA-AGACAAAGAAGGAATCCCACC 692
Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171
||||||||| | | || || || ||||||||| | ||||| | || || ||| ||
Sbjct 693 TGACCAACAAAGATTGATATTCGCGGGCAAACAACTGGAAGACGGGCGGACACTGGCTGA 752
Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||| || ||||||||||| || || || | ||||| | ||| | |||||
Sbjct 753 TTACAACATCCAAAAAGAATCTACTCTTCACCTCGTGCTTCGTCTACGTGGAGG 806
>seq12187
Length=9842
Score = 100 bits (110), Expect = 2e-16
Identities = 148/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 25005 ATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACT 25064
|| || ||||| || | ||||| || ||||||| | || |||||| || ||||||
Sbjct 9840 ATCTTCGTAAAAACCCTCACCGGGAAGACCATCACGCTGGAGGTGGAGAGCTCAGACACT 9781
Query 25065 ATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCG 25123
|| || ||||| | || | ||| || || || || || || || ||||| |||||
Sbjct 9780 ATTGACAACGTGAAGGCCAAGATTCAG-GATAAGGAGGGCATCCCTCCCGACCAGCAGCG 9722
Query 25124 GATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCA 25183
| | ||||||||||| || || | || || | |||||| ||| || |||||||| ||
Sbjct 9721 GTTGATTTTTGCCGGGAAGCAGCTGGAGGACGGGCGCACTCTGGCGGACTACAATATCCA 9662
Query 25184 AAAAGAATCCACGCTACATTTAGTGCT 25210
|| || |||||||| || || |||||
Sbjct 9661 GAAGGAGTCCACGCTGCACTTGGTGCT 9635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433115469272045
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |