Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq195 145 7e-30 seq8895 123 2e-23 seq12187 100 2e-16 >seq195 Length=29407 Score = 145 bits (160), Expect = 7e-30 Identities = 174/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||| | || ||||| || |||||| | || ||| |||| || || || || Sbjct 26997 ATGCAAATATTTATCAAAACTTTAACAGGTAAAACTATAACACTCGACGTTGAATCTTCA 27056 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | || | ||| |||||| || || ||||| || ||||| ||||| Sbjct 27057 GATACGATAGA-TAACGTAAAGTCTAAAATCCAGGATAAGGAAGGAATGCCACCCGACCA 27115 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | |||||||| || |||||||| ||||| | | || |||| |||||||| Sbjct 27116 ACAACGATTGATTTTTGCAGGAAAACAATTGGAAGACGGGAGAACATTGGGTGATTACAA 27175 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 ||| ||||||||||| || ||||| | ||| | | |||||||||| | ||| Sbjct 27176 TATACAAAAAGAATCAACCTTACATCTCGTGTTGCGTTTAAGAGGAGGTATTTA 27229 >seq8895 Length=8815 Score = 123 bits (136), Expect = 2e-23 Identities = 169/234 (72%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || ||||| || || | || ||||| ||||||| | || || ||| Sbjct 577 ACCATGCAGATCTTTGTGAAAACGCTTACTGGTAAGACCATCACCTTGGAGGTAGAGAGT 636 Query 25056 TCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 ||||||||||| || |||| | || |||| ||| ||||||||||| || ||||| Sbjct 637 TCTGACACTATTGACAACGTCA---AGGCCAAAATTCA-AGACAAAGAAGGAATCCCACC 692 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 ||||||||| | | || || || ||||||||| | ||||| | || || ||| || Sbjct 693 TGACCAACAAAGATTGATATTCGCGGGCAAACAACTGGAAGACGGGCGGACACTGGCTGA 752 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || ||||||||||| || || || | ||||| | ||| | ||||| Sbjct 753 TTACAACATCCAAAAAGAATCTACTCTTCACCTCGTGCTTCGTCTACGTGGAGG 806 >seq12187 Length=9842 Score = 100 bits (110), Expect = 2e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 25005 ATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACT 25064 || || ||||| || | ||||| || ||||||| | || |||||| || |||||| Sbjct 9840 ATCTTCGTAAAAACCCTCACCGGGAAGACCATCACGCTGGAGGTGGAGAGCTCAGACACT 9781 Query 25065 ATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCG 25123 || || ||||| | || | ||| || || || || || || || ||||| ||||| Sbjct 9780 ATTGACAACGTGAAGGCCAAGATTCAG-GATAAGGAGGGCATCCCTCCCGACCAGCAGCG 9722 Query 25124 GATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCA 25183 | | ||||||||||| || || | || || | |||||| ||| || |||||||| || Sbjct 9721 GTTGATTTTTGCCGGGAAGCAGCTGGAGGACGGGCGCACTCTGGCGGACTACAATATCCA 9662 Query 25184 AAAAGAATCCACGCTACATTTAGTGCT 25210 || || |||||||| || || ||||| Sbjct 9661 GAAGGAGTCCACGCTGCACTTGGTGCT 9635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433115469272045