Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq30393 134 2e-26 >seq30393 Length=6106 Score = 134 bits (148), Expect = 2e-26 Identities = 396/602 (66%), Gaps = 25/602 (4%) Strand=Plus/Plus Query 93106 ATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCC 93165 ||| || ||||| |||| ||||||||||||||| || | | ||| || | ||| || Sbjct 1176 ATGCAATCCTTCATCTCTTGATATCAACTCATTRGAAAAAGAAAGACCGGGCATCAGACC 1235 Query 93166 TCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGC 93225 |||||| || | ||||||||| | | || ||||||||| | ||||||||||| Sbjct 1236 TCGTTTTTTCAACCAAAATATGGCACAGAAGGAACCAGAAAATAGAATACCTTCCACACA 1295 Query 93226 TGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGC 93285 ||||| || | | |||||| || || || | || | ||||||||||| ||| Sbjct 1296 CGCAAACGCTATTAAACGTTCTGCGAA---CGCCGTATCTTTATTGATCCATTTTTGAGC 1352 Query 93286 CCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGT-AATCTC 93344 ||| | |||||||| || |||| | || | || || |||||||| | ||||| Sbjct 1353 CCAGTATGCTTTTTTTGAAACCGAAGGGATGGTGTGAATCGCATTAAATAGATGAATCT- 1411 Query 93345 GCTCGTCCG-AATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCA----GAATG 93399 | || || || | ||||||| ||| || || | ||||| | | |||| Sbjct 1412 -TTTGTGCGTGATTTTTTATGTATCGATCTATCAATAAGCTGTACATCTGACTGTGAATA 1470 Query 93400 GACATTCTCCATTGCAAT-TTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTT 93458 || | | ||| | | ||| | | ||| || | |||||| | || ||||||| Sbjct 1471 GA-----TTCGTTGTATTGTTGATAACTGTAAAAGGCACGAGCTTCTGGAATTTGCACTT 1525 Query 93459 CTTGA-GAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaa 93517 | | | ||||| ||| ||||||||||||| || || |||||||| |||| || || Sbjct 1526 CATCACTAAAATTTCT-GGCGAGATTTTCATTAACAATCCCATCGGACCCTGCGAAGAAT 1584 Query 93518 GCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGA 93577 |||||||||| |||| ||| || ||| || | | | |||||||| | Sbjct 1585 GCCAATATATTGCTTATGAAAAATTGTTCAGAGTCGTCCAACGATTCCCAATCAGCGTCG 1644 Query 93578 TCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACA-- 93635 || ||||||| || ||||| || ||||| || ||| || |||| ||| Sbjct 1645 TCCTTTGAAAAGTCTACTTCGGTAACCGTCCAGAAACTCGCTATAGCCTTTTCAAACAAG 1704 Query 93636 -TATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTT 93694 ||| ||| || |||||||||| || |||| ||| | ||||| || || || || Sbjct 1705 GTAT---ATAAATCGKGATATTGAATAGGGAATAATACATATCGATTTGGATTTTCAATT 1761 Query 93695 AG 93696 || Sbjct 1762 AG 1763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556580678135320