Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015-
08-05] 40,243 sequences; 281,270,454 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq30393 134 2e-26
>seq30393
Length=6106
Score = 134 bits (148), Expect = 2e-26
Identities = 396/602 (66%), Gaps = 25/602 (4%)
Strand=Plus/Plus
Query 93106 ATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCC 93165
||| || ||||| |||| ||||||||||||||| || | | ||| || | ||| ||
Sbjct 1176 ATGCAATCCTTCATCTCTTGATATCAACTCATTRGAAAAAGAAAGACCGGGCATCAGACC 1235
Query 93166 TCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGC 93225
|||||| || | ||||||||| | | || ||||||||| | |||||||||||
Sbjct 1236 TCGTTTTTTCAACCAAAATATGGCACAGAAGGAACCAGAAAATAGAATACCTTCCACACA 1295
Query 93226 TGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGC 93285
||||| || | | |||||| || || || | || | ||||||||||| |||
Sbjct 1296 CGCAAACGCTATTAAACGTTCTGCGAA---CGCCGTATCTTTATTGATCCATTTTTGAGC 1352
Query 93286 CCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGT-AATCTC 93344
||| | |||||||| || |||| | || | || || |||||||| | |||||
Sbjct 1353 CCAGTATGCTTTTTTTGAAACCGAAGGGATGGTGTGAATCGCATTAAATAGATGAATCT- 1411
Query 93345 GCTCGTCCG-AATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCA----GAATG 93399
| || || || | ||||||| ||| || || | ||||| | | ||||
Sbjct 1412 -TTTGTGCGTGATTTTTTATGTATCGATCTATCAATAAGCTGTACATCTGACTGTGAATA 1470
Query 93400 GACATTCTCCATTGCAAT-TTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTT 93458
|| | | ||| | | ||| | | ||| || | |||||| | || |||||||
Sbjct 1471 GA-----TTCGTTGTATTGTTGATAACTGTAAAAGGCACGAGCTTCTGGAATTTGCACTT 1525
Query 93459 CTTGA-GAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaa 93517
| | | ||||| ||| ||||||||||||| || || |||||||| |||| || ||
Sbjct 1526 CATCACTAAAATTTCT-GGCGAGATTTTCATTAACAATCCCATCGGACCCTGCGAAGAAT 1584
Query 93518 GCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGA 93577
|||||||||| |||| ||| || ||| || | | | |||||||| |
Sbjct 1585 GCCAATATATTGCTTATGAAAAATTGTTCAGAGTCGTCCAACGATTCCCAATCAGCGTCG 1644
Query 93578 TCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACA-- 93635
|| ||||||| || ||||| || ||||| || ||| || |||| |||
Sbjct 1645 TCCTTTGAAAAGTCTACTTCGGTAACCGTCCAGAAACTCGCTATAGCCTTTTCAAACAAG 1704
Query 93636 -TATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTT 93694
||| ||| || |||||||||| || |||| ||| | ||||| || || || ||
Sbjct 1705 GTAT---ATAAATCGKGATATTGAATAGGGAATAATACATATCGATTTGGATTTTCAATT 1761
Query 93695 AG 93696
||
Sbjct 1762 AG 1763
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556580678135320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |