Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq195 120 3e-22 seq12650 91.5 1e-13 seq8895 89.7 4e-13 seq1 87.8 2e-12 seq13311 82.4 6e-11 >seq195 Length=29407 Score = 120 bits (132), Expect = 3e-22 Identities = 176/248 (71%), Gaps = 1/248 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||| | ||||||||||| |||||||| | || || || || ||| | | Sbjct 26997 ATGCAAATATTTATCAAAACTTTAACAGGTAAAACTATAACACTCGACGTTGAATCTTCA 27056 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | || ||||| || || ||||| || || |||||||| ||| Sbjct 27057 GATACGATAGATAACGTAAAGTCTAAAATCCAGGATAAGGAAGGAATGCCACCCGACCAA 27116 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || ||||| || ||||| || || || | || | |||||||| Sbjct 27117 CAACGATTGATTTTTGCAGGAAAACAATTGGAAGACGGGAGAACATTGGGTGATTACAAT 27176 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTTCCATTTTAA 22458 || ||||||||||| ||| ||||| | || ||||| || | |||||| || | || || Sbjct 27177 ATACAAAAAGAATCAACCTTACATCTCGTGTTGCGTTTAAGAGGAGGTATTTAAATTCAA 27236 Query 22459 AAT-TATA 22465 ||| |||| Sbjct 27237 AATATATA 27244 >seq12650 Length=5101 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| |||||||| |||||| | || || ||||| | || |||||||| || | Sbjct 603 AAATATGCAGATTTTTGTGAAAACTCTCACAGGGAAAACAATTACCCTTGAAGTCGAGAG 662 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 || ||||| | ||| | | || ||||||||||| ||||| || || || || || Sbjct 663 CAGTGATACTATCGACAACGTGAAGGCCAAAATTCAAGATAAGGAAGGAATCCCTCCAGA 722 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAG 22369 ||||| || ||||| || || || || ||| ||| Sbjct 723 CCAACAGCGCCTTATTTTCGCTGGAAAGCAGGTAG 757 >seq8895 Length=8815 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || ||||| || |||| | || || || | | Sbjct 580 ATGCAGATCTTTGTGAAAACGCTTACTGGTAAGACCATCACCTTGGAGGTAGAGAGTTCT 639 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| |||||||||||||| || || || ||||| || ||| Sbjct 640 GACACTATTGACAACGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCACCTGACCAA 699 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | ||||| || |||||||| | || || || || | | ||||||||| Sbjct 700 CAAAGATTGATATTCGCGGGCAAACAACTGGAAGACGGGCGGACACTGGCTGATTACAAC 759 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||||||||| || Sbjct 760 ATCCAAAAAGAATCTAC 776 >seq1 Length=211102 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/137 (76%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 117081 GTCGAAGGCATTTTCTTTT-CAGGCAGTTTTGCTGCCATATTTTTTATCAAGACCA-AAG 117138 ||||||||||| ||||||| | | ||| |||| ||||| || | || || || | ||| Sbjct 114802 GTCGAAGGCATCTTCTTTTTCTGCCAGGTTTGACGCCATGTTCTACATGAA-ACAACAAG 114744 Query 117139 GTCTAATGCCGGGTCTAACGTTTAGCAACGAATTAATATCGCGTGACGAAGGTTTACACA 117198 | | ||||| |||||| |||| || ||||| | || ||||||||||||| | ||| Sbjct 114743 GACCGATGCCCGGTCTATCGTTCAGTAACGAGCTTATCGCGCGTGACGAAGGCATGCACC 114684 Query 117199 CCGATTTTGCGTGCATG 117215 ||||||||||||| || Sbjct 114683 ACGATTTTGCGTGCCTG 114667 >seq13311 Length=4779 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| ||||| || || || || || ||||| ||||| ||||| Sbjct 4761 AAGATTCAGGACAAGGAGGGAATTCCCCCTGACCAGCAGCGCCTTATCTTTGCGGGCAAG 4702 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| ||||||| | | || ||||| || || || || || ||| | || Sbjct 4701 CAGCTCGAGGACGGCCGCACCCTGGCTGACTACAATATCCAGAAGGAGTCTACCCTGCAC 4642 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 || || | || | || ||||| Sbjct 4641 TTGGTGCTCCGTCTCCGTGGAGG 4619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419522139549295