Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq37257 136 8e-27 seq11518 127 4e-24 seq38880 93.3 9e-14 seq15391 93.3 9e-14 seq10873 93.3 9e-14 seq25216 91.5 3e-13 seq15688 89.7 1e-12 seq4098 89.7 1e-12 seq1079 89.7 1e-12 seq8393 87.8 4e-12 seq7270 87.8 4e-12 >seq37257 Length=1198 Score = 136 bits (150), Expect = 8e-27 Identities = 439/672 (65%), Gaps = 32/672 (5%) Strand=Plus/Minus Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764 ||||| ||||| |||| ||||||||| || || | | ||||| | | | || || Sbjct 815 CTGTCCGGTGGATGGAGGATGAAGCTCGCACTTGCGAGAGCCATGTTGCAGAAAGCGGAC 756 Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTG 279824 || | ||| | || ||||| ||||| ||| ||||| |||||| ||| | ||| Sbjct 755 ATCTTGCTGATGGACGAGCCGACCAATCACTTGGACGTGGTCAACGTGAAGTGGGTGGTG 696 Query 279825 TCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTC 279884 |||| | | || || | ||||| | | | |||| || || ||| |||| || || Sbjct 695 GACTACTTGAAGAGCCTCACCAATGTGACGTGCATCATGGTGTCGCACCACTCCGGACTC 636 Query 279885 CTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAGCAC 279944 || |||| |||||||| |||| |||| | || | ||||||||| | | Sbjct 635 CTCGATGAAGTGTGCTCGCACATCCTTCAGATTAAGGAC---CTGAAGCTCGGCTGTGAG 579 Query 279945 ATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTG 280004 | |||||||||||| ||||| | |||| ||| |||| | | | || || | Sbjct 578 AAGGGCAACCTGTCTAGCTTCGTCGAGAAGCACCCCGAGGTGAAGTCTTTCTTCGAGTTC 519 Query 280005 AAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATCACATCA 280064 |||| | | | |||| || || ||||||| ||| | ||||| | | Sbjct 518 AAGGCCACAAAGCTTAAGTTCAGCTTTCCCCAGCCAGGCTTTATCGAGGGTGTGAAGAGT 459 Query 280065 AAGGATCGCGCAATCATGAAGCT--CC--GTGGCGTCTCCTTTGCTTATCCC---AAT-- 280115 |||| ||||| |||||||| | || ||| | | | | | || ||| ||| Sbjct 458 AAGGGCCGCGCTCTCATGAAGATGACCAAGTG----CACATATACGTACCCCGGAAATAC 403 Query 280116 -GGCCCCAACATCTTCAGCAGTGTCAACTC-GCAGGTTTCTATGAACTCACGGATTG-GT 280172 | || | |||| | ||| | ||| ||| || || | | || | | || Sbjct 402 RGAACCGACCATCACCGGCATT----ACTGTGCAAGTATCGCTTTCCAGCCGTGTGGCGT 347 Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 || | || | ||||||||| || ||||| ||| | ||||| | || ||||| |||||| Sbjct 346 GTG-TGGGCCGCAATGGTGCTGGCAAGTCGACCTTGATCAAGATGCTTACTGGTGAGACC 288 Query 280233 CAGGCC-------ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGT 280285 || || ||||||| || ||||||||||||||||| || |||| || || Sbjct 287 GTCCCCGATGAGAACCGAGGGGTG-GTGTGGAAGCATCCCAACATCCGTGTGGCATATGT 229 Query 280286 CGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACAT 280345 || ||||| |||||||||||||| ||| | ||||| |||| ||| || ||||| ||||| Sbjct 228 GGCACAGCATGCTTTCCACCACATTGAGCAACACCTCGACAAGACCCCCAACCAGTACAT 169 Query 280346 TCAGTGGCGCTA 280357 ||||||||||| Sbjct 168 CCAGTGGCGCTA 157 >seq11518 Length=9778 Score = 127 bits (140), Expect = 4e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 279703 CTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCG 279762 |||| || || || |||||||||||||||||||| |||||||| || | | || | Sbjct 5303 CTCTTTCCGGAGGGTGGAAGATGAAGCTGGCCCTTGGCCGCGCCATGCTCCAGAAGGCTG 5244 Query 279763 ATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAG 279822 | || | || || || ||||| || |||||||||||| | ||||| || ||||| | Sbjct 5243 ACATCTTGCTCCTCGACGAGCCCACTAACCACATGGACGTGAAGAACGTGGCTTGGCTGG 5184 Query 279823 TGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCT 279882 | | ||||| | || ||| ||| ||| ||||| | ||||| || |||||||| |||| Sbjct 5183 AGACGTACCTCAACAACCTGGAGACTGTGACTTCCATGATTGTGTCCCACGACTCGGGCT 5124 Query 279883 TCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG 279920 |||| || |||||| | |||||| ||||| ||| Sbjct 5123 TCCTGGACAATGTGTGCACGCACATCATCCACTACGAG 5086 >seq38880 Length=10038 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||||||||||||| || ||||||| || || |||| || |||||| |||||||| Sbjct 7988 ATAGCCCGGTTAGCTCAGTTGGCAGAGCGCCAGGCTTTTAACCTGGTGGTCATGGGTTCG 7929 Query 142561 AGCCCCACATCGGG 142574 ||||||| |||||| Sbjct 7928 AGCCCCATATCGGG 7915 >seq15391 Length=6492 Score = 93.3 bits (102), Expect = 9e-14 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| ||||||||||||| |||||| ||||||||||| Sbjct 5335 GCCCGCGTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCATGGGTTCGAGC 5394 Query 142564 CCCA 142567 |||| Sbjct 5395 CCCA 5398 >seq10873 Length=19966 Score = 93.3 bits (102), Expect = 9e-14 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| ||||||||||||| |||||| ||||||||||| Sbjct 632 GCCCGCGTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCATGGGTTCGAGC 573 Query 142564 CCCA 142567 |||| Sbjct 572 CCCA 569 >seq25216 Length=4587 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 142498 GAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGT 142557 || || ||||| |||||||||||||||||||| ||||||||||||| | |||| ||||| Sbjct 3646 GATATTGCCCGCGTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGCGGTCATGGGT 3705 Query 142558 TCGAGCCCCA 142567 |||||||||| Sbjct 3706 TCGAGCCCCA 3715 >seq15688 Length=4227 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||||| || ||||||| || || |||| || |||||| |||||||||| Sbjct 762 AGCCCGGTTAGCTCAGTTGGCAGAGCGCCAGGCTTTTAACCTGGTGGTCATGGGTTCGAG 703 Query 142563 CCCCACATCGGG 142574 ||||| |||||| Sbjct 702 CCCCATATCGGG 691 >seq4098 Length=24914 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||||| || ||||||| || || |||| || |||||| |||||||||| Sbjct 24399 AGCCCGGTTAGCTCAGTTGGCAGAGCGCCAGGCTTTTAACCTGGTGGTCATGGGTTCGAG 24458 Query 142563 CCCCACATCGGG 142574 ||||| |||||| Sbjct 24459 CCCCATATCGGG 24470 >seq1079 Length=27781 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| |||||| ||||||||| Sbjct 19863 AGCCCGCGTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCAAGGGTTCGAG 19922 Query 142563 CCCC 142566 |||| Sbjct 19923 CCCC 19926 >seq8393 Length=6707 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||||| || ||||||| || || |||| || |||||| ||||||||||| Sbjct 1199 GCCCGGTTAGCTCAGTTGGCAGAGCGCCAGGCTTTTAACCTGGTGGTCATGGGTTCGAGC 1140 Query 142564 CCCACATCGGG 142574 |||| |||||| Sbjct 1139 CCCATATCGGG 1129 >seq7270 Length=11497 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||||| || ||||||| || || |||| || |||||| ||||||||||| Sbjct 613 GCCCGGTTAGCTCAGTTGGCAGAGCGCCAGGCTTTTAACCTGGTGGTCATGGGTTCGAGC 554 Query 142564 CCCACATCGGG 142574 |||| |||||| Sbjct 553 CCCATATCGGG 543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027306833534363