Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq195 87.8 1e-12 >seq195 Length=29407 Score = 87.8 bits (96), Expect = 1e-12 Identities = 166/243 (68%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||||| ||||| ||||| || ||||| || || | || ||| | || Sbjct 26997 ATGCAAATATTTATCAAAACTTTAACAGGTAAAACTATAACACTCGACGTTGAATCTTCA 27056 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | | ||| ||||| ||||| || || | || ||||| Sbjct 27057 GATACGATAGATAACGTAAAGTCTAAAATCCAGGATAAGGAAGGAATGCCACCCGACCAA 27116 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | || ||||| || |||||| | ||||| | ||| ||| ||||||||| Sbjct 27117 CAACGATTGATTTTTGCAGGAAAACAATTGGAAGACGGGAGAACATTGGGTGATTACAAT 27176 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAATaa 22073 || || || ||||| || | ||| | || || |||||| ||||||| |||| | | | | Sbjct 27177 ATACAAAAAGAATCAACCTTACATCTCGTGTTGCGTTTAAGAGGAGG-TATTTAAATTCA 27235 Query 22074 aaa 22076 ||| Sbjct 27236 AAA 27238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357949153551022