Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq7861 116 7e-21 >seq7861 Length=6948 Score = 116 bits (128), Expect = 7e-21 Identities = 351/540 (65%), Gaps = 8/540 (1%) Strand=Plus/Plus Query 243959 GTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTG 244018 |||||||| | | || |||| ||||||| |||||||||||| ||| ||| Sbjct 2742 GTCTTGTACAGACGTTTAAGGTCATCGGGGATGTTAGGGATGTTCTGCACGCTGCCGTTG 2801 Query 244019 TGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAG-CGCTCCAGCGCCTC 244077 || |||| || | | ||||| | ||||| ||||| | | | || || | | Sbjct 2802 TGCGCGATTAGAATGTTCTTCATGTCTGCATTCCAAAGGCCTAGGTCTGTCAAG-TCGTT 2860 Query 244078 GACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTT 244137 || || |||| ||||||||| ||||| || |||||| | || |||| ||| Sbjct 2861 GAGCAAGTGCTGGTTCACCACGGTGAACTCGCCGCTCAGCACCCTCCGGGCATAGATGTT 2920 Query 244138 GCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGG 244197 ||| || ||||||| || ||| |||||||||| ||||||| ||| || || || Sbjct 2921 GCTTGTGTAAGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGAGGCCGTGGG 2980 Query 244198 CATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTC 244257 |||||| | ||| || || ||| | |||||||||| | ||| | ||| | Sbjct 2981 CATGGGAGCCACGAGGAGGGAGTTGCGCACGCCGTGCTTGGCAATGTCCTCCCGGAGACC 3040 Query 244258 GTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAG 244317 |||||| | | ||| || |||| | ||||||| || |||||| Sbjct 3041 AGCCCAGTCGTGACGGTCTGAGGGGGCCTC------AACTCCCCACAGATCGTGCTGCAG 3094 Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAG 244377 | | || ||||| | ||||||||| || || ||| || | ||| || |||||| || Sbjct 3095 CTGACCTTTGCTCATGGGGCTGCCTTCATACGTCTCATAAGTACCCTCCTCCTGGGCTAG 3154 Query 244378 CTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTC 244437 || ||| |||| ||| || ||| |||| | ||||| ||||| |||||||| | Sbjct 3155 CTGGCAGGACTCGGTGAGTGCCGCGAAGTAAACAGTCTCAAAGATTTCCTTGTTCAGCTG 3214 Query 244438 GCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTG 244497 | || | | | || |||||| | ||| | | || |||| | || || |||||||| Sbjct 3215 GATTGCTTCGGGGGAGTCGAAGGGCAGGCCGAGTAGCAGGAAGGCATCCGCAAGTCCCTG 3274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943864161969680