Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq21550 98.7 8e-16 seq26458 82.4 6e-11 seq17433 82.4 6e-11 >seq21550 Length=3044 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || ||||||||||| || || ||| |||||| || |||||||| ||||||| | ||| Sbjct 2656 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCCAGTGTGCGC 2597 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||| ||||| || ||||| ||||| | |||||| ||| || | || |||| Sbjct 2596 CCATCCTCCAGCTGCTTTCCCGCAAAGATCAGTCTCTGCTGGTCCGGGGGGATGCCCTCT 2537 Query 34030 TTGTCCATAATTTT 34043 |||||| |||||| Sbjct 2536 TTGTCCTGAATTTT 2523 >seq26458 Length=3991 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || |||||| ||||||||| || ||||| || || Sbjct 2094 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCAGCG 2035 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || |||| |||| |||||| || || || |||||||||||||| || Sbjct 2034 AGCGTGCGACCGTCCTCCAGTTGCTTCCCCGCGAAAATCAGGCGCTGCTGGTC 1982 >seq17433 Length=6093 Score = 82.4 bits (90), Expect = 6e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || ||||||| ||||| ||| ||||||||| ||||||||||| || Sbjct 2945 CCACCACGCAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCA 2886 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || || |||| || | ||||| || || || ||||||||||||||||| Sbjct 2885 AGAGTGCGGC-CGTCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGATC 2833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396867656154886