Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq8895 125 2e-23 seq195 125 2e-23 seq12187 105 2e-17 seq12650 98.7 2e-15 seq19440 91.5 3e-13 seq3475 89.7 1e-12 seq32895 84.2 5e-11 >seq8895 Length=8815 Score = 125 bits (138), Expect = 2e-23 Identities = 170/236 (72%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| ||||| |||| || |||||||||||| || || || || Sbjct 806 CCTCCACGTAGACGAAGCACGAGGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGCC 747 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | |||||| || ||||| |||| | ||||| | |||| Sbjct 746 AGTGTCCGCCCGTCTTCCAGTTGTTTGCCCGCGAATATCAATCTTTGTTGGTCAGGTGGG 687 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 ||||||||||| || || ||||| || || ||||| || |||| || ||| ||| Sbjct 686 ATTCCTTCTTTGTCTTGAATTTTGGCCTTGACGTTGTCAATAGTGTCAGAACTC---TCT 630 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTT 288479 || || | ||||| ||||| || || || || || || || |||||||| |||| Sbjct 629 ACCTCCAAGGTGATGGTCTTACCAGTAAGCGTTTTCACAAAGATCTGCATGGTGTT 574 >seq195 Length=29407 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 |||||||| | || ||||||||| ||||| || || | | || | |||||||| Sbjct 27205 ACGAGATGTAAGGTTGATTCTTTTTGTATATTGTAATCACCCAATGTTCTCCCGTCTTCC 27146 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 |||||||||||||| || |||| || ||||| ||| |||||||| ||||||||| Sbjct 27145 AATTGTTTTCCTGCAAAAATCAATCGTTGTTGGTCGGGTGGCATTCCTTCCTTATCCTGG 27086 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 ||||| | || ||||| ||||| | ||| ||||| || ||||| || || || || Sbjct 27085 ATTTTAGACTTTACGTTATCTATCGTATCTGAAGATTCAACGTCGAGTGTTATAGTTTTA 27026 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||| |||| ||||| ||||| Sbjct 27025 CCTGTTAAAGTTTTGATAAATATTTGCAT 26997 >seq12187 Length=9842 Score = 105 bits (116), Expect = 2e-17 Identities = 138/190 (73%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||| || || ||||| ||||| || | || || || || || Sbjct 9656 TCCTTCTGGATATTGTAGTCCGCCAGAGTGCGCCCGTCCTCCAGCTGCTTCCCGGCAAAA 9715 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||||| || ||||| || || |||||||| || || || |||||||| Sbjct 9716 ATCAACCGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGAATCTTGGCCTTCACGTTG 9775 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || |||| || |||| || || || |||||||| ||||||||||| || || || Sbjct 9776 TCAATAGTGTCTGAGCTC---TCCACCTCCAGCGTGATGGTCTTCCCGGTGAGGGTTTTT 9832 Query 288460 ACGAATATCT 288469 ||||| |||| Sbjct 9833 ACGAAGATCT 9842 >seq12650 Length=5101 Score = 98.7 bits (108), Expect = 2e-15 Identities = 112/149 (75%), Gaps = 6/149 (4%) Strand=Plus/Minus Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGG 288384 || ||||| ||||| || || |||||||| ||||| ||||||||| ||||| || Sbjct 752 TGCTTTCCAGCGAAAATAAGGCGCTGTTGG---TCTGGAGGGATTCCTTCCTTATCTTGA 696 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 ||||| || |||||||| || |||| ||| || || ||||| || || || || ||| Sbjct 695 ATTTTGGCCTTCACGTTGTCGATAGTATCACTGCTCTCGACTTCAAGGGTAATTGTTTTC 636 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || || |||||||| Sbjct 635 CCTGTGAGAGTTTTCACAAAAATCTGCAT 607 >seq19440 Length=5648 Score = 91.5 bits (100), Expect = 3e-13 Identities = 145/205 (71%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 258391 ATAATAGATTGTTTTATATTTTACAATGAGCTAGATTTACTGAACTACAGATTACATACA 258450 || |||||||||||||| || |||||||| | | | || | | ||| | | | | Sbjct 2481 ATTATAGATTGTTTTATTATTAACAATGAGTTGAAAATGTTGGAATTTAGACTGAA-ATA 2539 Query 258451 T-TAAATGATATCGTGGATTATTTTATAATAGTAGAATCTACACATACATTTAGCGGTAA 258509 | |||||||| | |||||| || ||| || | ||| |||||| ||||| || || || Sbjct 2540 TCTAAATGATTTTGTGGATCATCACATATTAATTGAAAGTACACACACATTCAGTGGAAA 2599 Query 258510 GGAAAAAGAATTATTTTTTACTGATAATAAA----CATTTATTTGAAAAATTCAAAGATA 258565 | ||||||||||||| | | ||||||||| ||||||| || ||| || ||| Sbjct 2600 GAAAAAAGAATTATTCTATCACGATAATAAAAGATACTTTATTTAAACAATATCAACATA 2659 Query 258566 AAATAATACATATTGTCGTAGATGA 258590 |||| || || | ||||| ||||| Sbjct 2660 AAATCATCCACGTAGTCGTCGATGA 2684 >seq3475 Length=17180 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 258127 CCATTGATCGTTTGCTGAATCGATTCGATGGCGAAGTTGGTGTAACGACGGTACACGGTC 258186 ||||||| ||||| ||||| || || ||||| || ||||||| ||||| || || Sbjct 2941 CCATTGAGAGTTTGTTGAATAGACTCCATGGCAAAATTGGTGTGGCGACGATAGACAACT 2882 Query 258187 TTGAAGAAGGTGATCTGAGGGTTGCCGGTCAGGTACACGTCCTGAGCGCCGTACGCGACG 258246 ||||| || | ||| | ||| || || || | | | || || ||||| || || |||||| Sbjct 2881 TTGAAAAAAGAGATTTCAGGCTTACCTGTTAAGAAGACATCTTGAGCACCATAAGCGACG 2822 Query 258247 AGTTGCGAGAGTCCTCCAGCCATGTTCTA 258275 |||||| | |||||| ||||||| || Sbjct 2821 AGTTGCATTAATCCTCCTCCCATGTTTTA 2793 >seq32895 Length=1541 Score = 84.2 bits (92), Expect = 5e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 258127 CCATTGATCGTTTGCTGAATCGATTCGATGGCGAAGTTGGTGTAACGACGGTACACGGTC 258186 ||||| | ||||| ||||| || || ||||| || ||||||| ||||| || || Sbjct 1387 CCATTCAAAGTTTGTTGAATAGACTCCATGGCAAAATTGGTGTGGCGACGATAGACCACT 1446 Query 258187 TTGAAGAAGGTGATCTGAGGGTTGCCGGTCAGGTACACGTCCTGAGCGCCGTACGCGACG 258246 ||||| || | ||| | ||| || || || | | | || || ||||| || || |||||| Sbjct 1447 TTGAAAAAAGAGATTTCAGGTTTACCTGTTAAGAAGACATCTTGAGCACCATAAGCGACG 1506 Query 258247 AGTTGCGAGAGTCCTCCAGCCATGTTCTA 258275 |||||| | |||||| ||||||| || Sbjct 1507 AGTTGCATTAATCCTCCTCCCATGTTTTA 1535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179046154339754