Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq37257 113 1e-19 seq11518 100 6e-16 seq19440 96.9 8e-15 seq3475 95.1 3e-14 seq32895 89.7 1e-12 seq22762 87.8 4e-12 >seq37257 Length=1198 Score = 113 bits (124), Expect = 1e-19 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 333336 TAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAA 333395 || ||||| ||||| ||||||||||| ||| |||| || || | ||| |||||||||||| Sbjct 157 TAGCGCCACTGGATGTACTGGTTGGGGGTCTTGTCGAGGTGTTGCTCAATGTGGTGGAAA 216 Query 333396 GCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAAC 333442 |||||||||||||| || || | ||| || || ||||||||||| || Sbjct 217 GCATGCTGTGCCACATATGCCACACGGATGTTGGGATGCTTCCACAC 263 >seq11518 Length=9778 Score = 100 bits (110), Expect = 6e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 333777 TCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATC 333836 ||||| ||||| || ||||| ||| ||| ||||| || |||||||| ||||||||| Sbjct 5087 TCGTAGTGGATGATGTGCGTGCACACATTGTCCAGGAAGCCCGAGTCGTGGGACACAATC 5146 Query 333837 ACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACA 333896 | | | | || || |||||| | ||||| |||||| |||||| ||| Sbjct 5147 ATGGAAGTCACAGTCTCCAGGTTGTTGAGGTACGTCTCCAGCCAAGCCACGTTCTTCACG 5206 Query 333897 GAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGT 333956 | ||||| || |||||||| || || | | | || ||| ||||||| || || Sbjct 5207 TCCATGTGGTTAGTGGGCTCGTCGAGGAGCAAGATGTCAGCCTTCTGGAGCATGGCGCGG 5266 Query 333957 GCAAGAGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGG 334004 |||| || || ||||| ||||||||||| ||||||| | | || ||| Sbjct 5267 CCAAGGGCCAGCTTCATCTTCCACCCTCCGGAAAGAGCGGTGATGGGG 5314 >seq19440 Length=5648 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/205 (72%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 232789 ATAATAGATTGTTTTATATTTTACAATGAGCTAGATTTACTGAACTACAGATTACATACA 232848 || |||||||||||||| || |||||||| | | | || | | ||| | | | | Sbjct 2481 ATTATAGATTGTTTTATTATTAACAATGAGTTGAAAATGTTGGAATTTAGACTGAA-ATA 2539 Query 232849 T-TAAATGATATCGTGGATTATTTTATAATAGTAGAATCTACACATACATTTAGCGGTAA 232907 | |||||||| | |||||| || ||| || | ||| |||||| ||||| || || || Sbjct 2540 TCTAAATGATTTTGTGGATCATCACATATTAATTGAAAGTACACACACATTCAGTGGAAA 2599 Query 232908 GGAAAAAGAATTATTTTTTACTGATAATAA---ATA-TTTATTTGAAAAATTCAAAGATA 232963 | ||||||||||||| | | |||||||| ||| ||||||| || ||| || ||| Sbjct 2600 GAAAAAAGAATTATTCTATCACGATAATAAAAGATACTTTATTTAAACAATATCAACATA 2659 Query 232964 AAATAATACATATTGTCGTAGATGA 232988 |||| || || | ||||| ||||| Sbjct 2660 AAATCATCCACGTAGTCGTCGATGA 2684 >seq3475 Length=17180 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 222513 CCATTGATCGTTTGCTGAATCGATTCGATGGCGAAGTTGGTGTAACGACGGTACACGGTC 222572 ||||||| ||||| ||||| || || ||||| || ||||||| ||||| || || Sbjct 2941 CCATTGAGAGTTTGTTGAATAGACTCCATGGCAAAATTGGTGTGGCGACGATAGACAACT 2882 Query 222573 TTGAAGAAGGTGATCTGAGGGTTACCGGTCAGGTACACGTCCTGAGCGCCGTACGCGACG 222632 ||||| || | ||| | ||| ||||| || | | | || || ||||| || || |||||| Sbjct 2881 TTGAAAAAAGAGATTTCAGGCTTACCTGTTAAGAAGACATCTTGAGCACCATAAGCGACG 2822 Query 222633 AGTTGCGAGAGTCCTCCAGCCATGTTT 222659 |||||| | |||||| |||||||| Sbjct 2821 AGTTGCATTAATCCTCCTCCCATGTTT 2795 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 232527 CCATTGATCGTTTGCTGAATCGATTCGATGGCGAAGTTGGTGTAACGACGGTACACGGTC 232586 ||||||| ||||| ||||| || || ||||| || ||||||| ||||| || || Sbjct 2941 CCATTGAGAGTTTGTTGAATAGACTCCATGGCAAAATTGGTGTGGCGACGATAGACAACT 2882 Query 232587 TTGAAGAAGGTGATTTGGGGGTTGCCGGTCAGGTACACGTCCTGAGCGCCGTACGCGACG 232646 ||||| || | ||||| || || || || | | | || || ||||| || || |||||| Sbjct 2881 TTGAAAAAAGAGATTTCAGGCTTACCTGTTAAGAAGACATCTTGAGCACCATAAGCGACG 2822 Query 232647 AGTTGCGAGAGTCCTCCAGCCATGTTCTA 232675 |||||| | |||||| ||||||| || Sbjct 2821 AGTTGCATTAATCCTCCTCCCATGTTTTA 2793 >seq32895 Length=1541 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 222513 CCATTGATCGTTTGCTGAATCGATTCGATGGCGAAGTTGGTGTAACGACGGTACACGGTC 222572 ||||| | ||||| ||||| || || ||||| || ||||||| ||||| || || Sbjct 1387 CCATTCAAAGTTTGTTGAATAGACTCCATGGCAAAATTGGTGTGGCGACGATAGACCACT 1446 Query 222573 TTGAAGAAGGTGATCTGAGGGTTACCGGTCAGGTACACGTCCTGAGCGCCGTACGCGACG 222632 ||||| || | ||| | ||| ||||| || | | | || || ||||| || || |||||| Sbjct 1447 TTGAAAAAAGAGATTTCAGGTTTACCTGTTAAGAAGACATCTTGAGCACCATAAGCGACG 1506 Query 222633 AGTTGCGAGAGTCCTCCAGCCATGTTT 222659 |||||| | |||||| |||||||| Sbjct 1507 AGTTGCATTAATCCTCCTCCCATGTTT 1533 Score = 84.2 bits (92), Expect = 5e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 232527 CCATTGATCGTTTGCTGAATCGATTCGATGGCGAAGTTGGTGTAACGACGGTACACGGTC 232586 ||||| | ||||| ||||| || || ||||| || ||||||| ||||| || || Sbjct 1387 CCATTCAAAGTTTGTTGAATAGACTCCATGGCAAAATTGGTGTGGCGACGATAGACCACT 1446 Query 232587 TTGAAGAAGGTGATTTGGGGGTTGCCGGTCAGGTACACGTCCTGAGCGCCGTACGCGACG 232646 ||||| || | ||||| || || || || | | | || || ||||| || || |||||| Sbjct 1447 TTGAAAAAAGAGATTTCAGGTTTACCTGTTAAGAAGACATCTTGAGCACCATAAGCGACG 1506 Query 232647 AGTTGCGAGAGTCCTCCAGCCATGTTCTA 232675 |||||| | |||||| ||||||| || Sbjct 1507 AGTTGCATTAATCCTCCTCCCATGTTTTA 1535 >seq22762 Length=2761 Score = 87.8 bits (96), Expect = 4e-12 Identities = 224/333 (67%), Gaps = 6/333 (2%) Strand=Plus/Minus Query 222330 TAGTGTTTGTCGATACGTTGACCACCGATTTCGAGTTCGACGTCCTGTAGCAGTTCCTCT 222389 ||||||||||| |||||||||||||||||||| |||||||| | | | ||| | | | Sbjct 677 TAGTGTTTGTCAATACGTTGACCACCGATTTCAAGTTCGACATATTCGATCAGAGCATGT 618 Query 222390 GCGGGATAGTAGGTGGTAC-CACCGTTACCGACCTTGGTCAGTACGAATTCCA-CCACGA 222447 || ||| ||| ||||| | | | || | ||| ||| | |||| | Sbjct 617 CCGACTGAGTTTACA-TACTCACCGGAATTTGTATGTGGCAATTCGACTTCTAGCCAC-A 560 Query 222448 TGTCGGTGATGAGGTCACCGTTGCGAGAGATC-TGGGTGCTCACCTTGTTCCCAAATCCG 222506 ||| ||||| || |||||||| || || | | || | | || || || || Sbjct 559 TGTTTGTGATAAGATCACCGTTTCGGCTGACGGTAGCTG-TGAGACGATTGCCCCATGCG 501 Query 222507 ACGCTGCCATTGATCGTTTGCTGAATCGATTCGATGGCGAAGTTGGTGTAACGACGGTAC 222566 | | ||||| | ||||| ||||| || || ||||| ||||| |||| || || || Sbjct 500 GTGGTACCATTCAAAGTTTGTTGAATAGACTCCATGGCAAAGTTAGTGTGGCGGCGATAG 441 Query 222567 ACGGTCTTGAAGAAGGTGATCTGAGGGTTACCGGTCAGGTACACGTCCTGAGCGCCGTAC 222626 || ||||| || | ||| | ||| ||||| || | | | || || ||||| || || Sbjct 440 ACCACTTTGAAAAAAGAGATTTCAGGTTTACCTGTTAAGAAGACATCTTGAGCACCATAA 381 Query 222627 GCGACGAGTTGCGAGAGTCCTCCAGCCATGTTT 222659 |||||||||||| | |||||| |||||||| Sbjct 380 GCGACGAGTTGCATTAATCCTCCTCCCATGTTT 348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102311340252050