Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq30393 120 4e-22 seq7861 109 7e-19 seq7167 93.3 5e-14 seq188 91.5 2e-13 seq27800 89.7 6e-13 >seq30393 Length=6106 Score = 120 bits (132), Expect = 4e-22 Identities = 489/754 (65%), Gaps = 24/754 (3%) Strand=Plus/Plus Query 125747 TCCAGCTTGC-CGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCT 125805 |||||||| | | || || || || | || || || ||||| ||||| || |||||||| Sbjct 864 TCCAGCTTTCGCATATTCACCGACTCTTTTTTCAAAAAAGTTAGTCTTTCCATCCAAGCT 923 Query 125806 GATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGTTGGCAC--CCCAAT 125862 |||||| ||||||||||| ||||| ||||||| || |||| | | | | |||||| Sbjct 924 GATATTTTCCATAAAATCGAATGGATTCTTTG--TTGCAAAGATAATAGAATATCCCAAT 981 Query 125863 CTGTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCT-TCTCAGAGTTCA 125921 ||||| | | ||||| | ||| | || ||||| || ||||| | | || |||| Sbjct 982 -TGTTTTAATAATCGATCTGCAACGAATTCGATGTATTCCGACATTAATTTTTGA-TTCA 1039 Query 125922 TACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTT 125981 |||| || | |||||||| | || ||| || | || || | | || |||| Sbjct 1040 TACCAATCATCCGACATGGGATTGATTCTGTGATAAATTCTTTTTCGTTCTGGACAGCTT 1099 Query 125982 CCCGCACGATGGCGTGAA-TGGTGTCCACCCCAGGT---CTATTGCGCAAAGTCTTGAAG 126037 | ||||| || | | ||| | |||| || || | || | ||| Sbjct 1100 CAGATACGATATTATGGACTATTGTTT-CTGAAGGTTTCCTTTTTAGGTAA-TGAAAAAG 1157 Query 126038 AGTTCCACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAG 126097 |||| || || |||||||| || | || || || | || || | ||||| || || Sbjct 1158 AGTTACA--GCGAACTCTTGATGCAATCCTTCATCTCTTGATATCAACTCATTRGAAAAA 1215 Query 126098 CACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAG 126157 | || || ||||| ||||| || || |||||||| || || ||||| || ||||| || Sbjct 1216 GAAAGACCGGGCATCAGACCTCGTTTTTTCAACCAAAATATGGCACAGAAGGAACCAGAA 1275 Query 126158 AAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTT 126217 || | || || ||||||||||| ||||| | | ||| || || || | || | | Sbjct 1276 AATAGAATACCTTCCACACACGCAAACGCTATTAAACGTTCTGCGAACG---CCGTATCT 1332 Query 126218 GTGTCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATAC--ACGGGACGGTCTGGA 126275 | | | ||| || ||||| | || |||| | || || | |||| ||| || | Sbjct 1333 TTATTGATCCATTTTTGAGCCCAGTATGC--TTTTTTTGAAACCGAAGGGATGGTGTGAA 1390 Query 126276 TCGCTTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTG 126335 |||| | ||| || | |||||| || ||| ||| ||||| |||||| | | Sbjct 1391 TCGCATTAAATAGATGAATCTTTTGTGCGTGATTTTTTATGTATCGATCTATCAATAAGC 1450 Query 126336 AATATGTTTCGCCGTGGACCATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTT 126395 || | | | ||| | ||| || | ||||| ||| || | || |||| Sbjct 1451 TGTACATCTGACTGTGAATAGATTCGTTGTATTGTTGATAACTGTAAAAGGCACGAGCTT 1510 Query 126396 CGCTTATCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGG 126455 | || || || ||||| |||||| | || ||| ||| |||||| ||||||| Sbjct 1511 CTGGAATTTGCACTTCATCACTAAAATTTCTGGCGAGATTTTCATTAACAATCCCATCGG 1570 Query 126456 ACCCAGCAAAAAACGCCAGGATATACTTTATGAA 126489 |||| || || || |||| |||| ||||||| Sbjct 1571 ACCCTGCGAAGAATGCCAATATATTGCTTATGAA 1604 >seq7861 Length=6948 Score = 109 bits (120), Expect = 7e-19 Identities = 223/329 (68%), Gaps = 7/329 (2%) Strand=Plus/Plus Query 114902 GCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CGACCAGCCTGGTTT 114958 |||||||| ||||| ||||| | |||| | ||||| || | |||| |||| | Sbjct 4632 GCGTGCCAAGGTTCAAGGTAGATGGCGAAAGCACCCTTTCGCTTTCCACCACCCTGATCG 4691 Query 114959 ACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCA 115018 ||||| | || ||| | || || || |||||||| || | ||| || | || || Sbjct 4692 ACATAGCGGGCAGTGTCGTTGAAGACACGAAGCATAGGGACGATGCCGTTCGAGGTTCCG 4751 Query 115019 TTTGTCCCCCGAATACGAGACTTATTG--GCTCTGACATCATGGATGTGCATACCAATAC 115076 || || |||||||| | ||| | | | | || | |||||||| | || || | Sbjct 4752 TTGGTGCCCCGAAT--GTAACTACTGGTAGAACGGATGTTATGGATGTTGAGGCCGATCC 4809 Query 115077 CCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCG 115136 | || || | |||||| ||| || |||||| | || || ||||||| || ||||| Sbjct 4810 CTCCGGCGCTCTTTGAAATTGCAGCACACTCCTTCAGCGTGTCGTAGATACCTTCGATAC 4869 Query 115137 AGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGT 115196 ||| | || |||| || | ||||||||| || || || | ||| || || |||| Sbjct 4870 TGTCGTCTTTCATTGCAATCAAGAAGCAGCTGCTCAGCTGAGGGCGTGGCGTGCCGGCGT 4929 Query 115197 TGAAGAGGGTTGGTGTCGCGTGGATGAAC 115225 ||||||| || |||| |||||| ||||| Sbjct 4930 TGAAGAGCGTAGGTGACGCGTGTGTGAAC 4958 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 113941 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGA 114000 |||||| ||| | ||||| ||||| |||||||| ||||| |||| ||| || | |||||| Sbjct 2912 ATAGATGTTGCTTGTGTAAGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGA 2971 Query 114001 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 114036 ||| ||||||||||| |||| ||| ||| ||| || Sbjct 2972 GGCCGTGGGCATGGGAGCCACGAGGAGGGAGTTGCG 3007 >seq7167 Length=7357 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 29731 GAACGCTTCAACCACTCCGTTGATGGCATCCCCTACGACTGGAAGTTCCTCTATGGTGTC 29790 || |||||| ||| ||| ||||||||||| || |||| |||||||| || ||||| Sbjct 4316 GAGCGCTTCGGGCACGACGTGGATGGCATCCCATATGACTTCAAGTTCCTGTACGGTGTG 4375 Query 29791 GCCGGGTATCACCTCAAGGCGTGTGAGATGAATGCCGCATTTGGTCTCG 29839 ||||||| || | ||||||||||| ||||| ||||| ||||| |||| Sbjct 4376 CTCGGGTATAACATGAAGGCGTGTGAAATGAACGCCGCCTTTGGCCTCG 4424 >seq188 Length=36365 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 52144 TCAAACACACCATCGTAGTCATCCACATTCTCCATGACGGACTCAGACCAACCCTCAAGT 52203 ||||| ||| ||| || ||||| | | ||||| || ||||||||||||||| | | Sbjct 5966 TCAAAAACATTATCATAATCATCAATACCGTCCATCACATTCTCAGACCAACCCTCTAAT 5907 Query 52204 TGGATCTCAAATGGATTGTACCTTTTGTTGAGGAACTCCAGACCCGTCACACAGGCAACC 52263 | ||| |||||||||| ||||||||| || | ||||| || || |||||| | || | | Sbjct 5906 TTGATATCAAATGGATCGTACCTTTTATTTAAAAACTCAAGTCCTGTCACAGATGCCATC 5847 Query 52264 AACATACG 52271 ||||| || Sbjct 5846 AACATTCG 5839 >seq27800 Length=2063 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 || || ||| ||| | |||||||| || | |||||| || || |||| || || Sbjct 612 GCGAAGTCTCTGTGCATCCCCTCGTCGCGAGCGATGAGCTCGTTGCTGAAGGCGAGCCCC 553 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| || || |||||||||||||| || || || || || | ||||||||||| Sbjct 552 GGCATCAGTCCGCGCTTCTTCAACCAAAAGATAGCGCAGAAACTCGCGGAGAAGAAGATG 493 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACG 126195 |||||||| |||||||| || | ||||| Sbjct 492 CCCTCCACGCACGCGAAAGCGAGAAGACG 464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597053108738440