Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq12187 116 4e-21 seq195 116 4e-21 seq18016 105 7e-18 seq13311 91.5 2e-13 seq17433 89.7 6e-13 seq8895 87.8 2e-12 seq26458 84.2 2e-11 >seq12187 Length=9842 Score = 116 bits (128), Expect = 4e-21 Identities = 156/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||||| |||| ||| |||||| || |||||||| || |||||||| ||| || Sbjct 9632 CGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCCAGAGTGCGCCCG 9691 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || || || || | ||||||||||||| || | || |||||| Sbjct 9692 TCCTCCAGCTGCTTCCCGGCAAAAATCAACCGCTGCTGGTCGGGAGGGATGCCCTCCTTA 9751 Query 42114 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 ||| ||| | || | | ||| | | | ||||| |||| ||||| || | ||| Sbjct 9752 TCC-TGAATCTTGGCCTTCACGTTGTCAATAGTGTCTGAGCTC---TCCACCTCCAGCGT 9807 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGAT 42202 |||||| || || || || || ||||| ||||| Sbjct 9808 GATGGTCTTCCCGGTGAGGGTTTTTACGAAGAT 9840 >seq195 Length=29407 Score = 116 bits (128), Expect = 4e-21 Identities = 176/249 (71%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 41961 TTATATATATT-AATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTC 42019 |||||||| || |||||| ||||||||||||||||||||| | ||| || || || Sbjct 27245 TTATATATTTTGAATTTAAATACCTCCTCTTAAACGCAACACGAGATGTAAGGTTGATTC 27186 Query 42020 CTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATAT 42079 ||||| |||||||||||| ||| || | | |||| || | || || || || || || Sbjct 27185 TTTTTGTATATTGTAATCACCCAATGTTCTCCCGTCTTCCAATTGTTTTCCTGCAAAAAT 27126 Query 42080 GAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGC 42139 | ||| || ||||||| ||||| | ||||| ||| |||||| || | | | Sbjct 27125 CAATCGTTGTTGGTCGGGTGGCATTCCTTCCTTATCCTGGATTTTAGACTTTACGTTATC 27066 Query 42140 CACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAA 42199 | ||| || ||||| || |||| || || ||||| || |||| || || | ||| Sbjct 27065 TATCGTATCTGAAGATTCAACGTCGAGTGTTATAGTTTTACCTGTTAAAGTTTTGATAAA 27006 Query 42200 GATTTGCAT 42208 |||||||| Sbjct 27005 TATTTGCAT 26997 >seq18016 Length=3756 Score = 105 bits (116), Expect = 7e-18 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||| | |||||| |||| ||| ||||||||| |||||||| ||||| Sbjct 90 ACCTCCKCGGAGACGGAGCACCAAGTGCAGGGTGGACTCCTTTTGGATATTGTAGTCAGC 149 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || |||| || |||||||| || ||||| ||||| ||||||||||| | ||| Sbjct 150 GAGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCAGGTGG 209 >seq13311 Length=4779 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 41974 TTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 42033 |||| | ||||| | | ||| | |||||| |||| || |||||| || ||||||| Sbjct 4611 TTTACTGTCCTCCACGGAGACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATATTGT 4670 Query 42034 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 42093 | |||||||| || || |||| || |||||||| || || || || || |||||||||| Sbjct 4671 AGTCAGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCAAAGATAAGGCGCTGCTGGT 4730 Query 42094 CGGCTGGCACGCTCTCCTTGTCC 42116 | | || | | |||||||||| Sbjct 4731 CAGGGGGAATTCCCTCCTTGTCC 4753 >seq17433 Length=6093 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | ||| |||||| || || ||||||||||| ||||| || | Sbjct 2934 ACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTGCGGCC 2875 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 ||| || ||||||||||||||||| || || |||||||| || Sbjct 2874 GTCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGATC 2833 >seq8895 Length=8815 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/196 (72%), Gaps = 10/196 (5%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || ||||| || |||||||||||||| |||||| |||| || || || || || |||||| Sbjct 770 TCTTTTTGGATGTTGTAATCAGCCAGTGTCCGCCCGTCTTCCAGTTGTTTGCCCGCGAAT 711 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || | || || ||||| | ||| | | || |||| | ||| |||| | |||| ||| Sbjct 710 ATCAATCTTTGTTGGTCAGGTGGGATTCCTTCTTTGT-CTTGAATTTTGGCCTTGA-CGT 653 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| ||| || || || | |||||||| || || || ||||| | Sbjct 652 TGTCAATAGTGTCAGAACTC---TCTACCTCCAAGGTGATGGTCTTACCAGTAAGCGTTT 596 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||| ||||| Sbjct 595 TCACAAAGATCTGCAT 580 >seq26458 Length=3991 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| |||| ||| |||||| || |||||||| ||||| || || || || Sbjct 2082 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCAGCGAGCGTGCGACCG 2023 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTC 42109 || || || ||||| || ||||| || || ||||||||||||| || | || ||| Sbjct 2022 TCCTCCAGTTGCTTCCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATGCCCTC 1967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542939543591120