Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq12187 102 8e-17 seq8895 98.7 1e-15 seq195 91.5 1e-13 seq17433 87.8 2e-12 seq18016 84.2 2e-11 seq26458 82.4 8e-11 seq13311 82.4 8e-11 >seq12187 Length=9842 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | || | ||| || || || || || ||||| || || | |||||| |||| Sbjct 9635 AGCACCAAGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCCAGAGTGCGCCCGTCC 9694 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| |||||| |||| | |||||||||||||||||| || || || || || Sbjct 9695 TCCAGCTGCTTCCCGGCAAAAATCAACCGCTGCTGGTCGGGAGGGATGCCCTCCTTATCC 9754 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || || | ||||| || | || | |||| Sbjct 9755 TGAATCTTGGCCTTCACGTTGTCAATAGTGTCTGAGCTCTCCACCTCCAGCGTGATGGTC 9814 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAAT 64437 || ||||| | ||||||||||| || Sbjct 9815 TTCCCGGTGAGGGTTTTTACGAAGAT 9840 >seq8895 Length=8815 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| || |||| || ||||||||||| ||||||||||| || | || ||| |||| Sbjct 792 AAGCACGAGGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGCCAGTGTCCGCCCGTC 733 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| || || ||||| || | || | | || ||||| || || ||||||||||| || Sbjct 732 TTCCAGTTGTTTGCCCGCGAATATCAATCTTTGTTGGTCAGGTGGGATTCCTTCTTTGTC 673 Query 64351 TTGTATTTT 64359 ||| ||||| Sbjct 672 TTGAATTTT 664 >seq195 Length=29407 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| ||||| | || ||||||||||| || |||||||| | | || | | ||||||| Sbjct 27206 CACGAGATGTAAGGTTGATTCTTTTTGTATATTGTAATCACCCAATGTTCTCCCGTCTTC 27147 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 | || || || ||| |||| | || || |||||||| || |||||||| || || || Sbjct 27146 CAATTGTTTTCCTGCAAAAATCAATCGTTGTTGGTCGGGTGGCATTCCTTCCTTATCCTG 27087 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 ||||| |||||| || | ||||| | || || || | |||| || || Sbjct 27086 GATTTTAGACTTTACGTTATCTATCGTATCTGAAGATTCAACGTCGAGTGTTATAGTTTT 27027 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || |||||||| | || |||||||| Sbjct 27026 ACCTGTTAAAGTTTTGATAAATATTTGCAT 26997 >seq17433 Length=6093 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | |||||| | |||| || || || || || ||||||||||| || Sbjct 2945 CCACCACGCAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCA 2886 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| ||||||||||| || || |||| || |||||||| || ||||| Sbjct 2885 AGAGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGATCAGGAGGG 2826 Query 64337 ATTCCT 64342 |||||| Sbjct 2825 ATTCCT 2820 >seq18016 Length=3756 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || ||||| || ||||| || |||| ||||| |||| || ||||||||||| Sbjct 121 GTGGACTCCTTTTGGATATTGTAGTCAGCGAGAGTGCGACCGTCCTCGAGCTGCTTGCCC 180 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 || | ||||| ||||||||||| || ||||||||| Sbjct 181 GCGAAGATGAGACGCTGCTGGTCAGGTGGAATTCCT 216 >seq26458 Length=3991 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | ||| || || || || || ||||| || ||| Sbjct 2094 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCAGCG 2035 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || || ||||| || || |||| || ||||||||||||||||| Sbjct 2034 AGCGTGCGACCGTCCTCCAGTTGCTTCCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGG 1975 Query 64337 ATTCCTTC 64344 || || || Sbjct 1974 ATGCCCTC 1967 >seq13311 Length=4779 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || || ||||| || || | |||||| |||| || ||||||||||| Sbjct 4649 GTAGACTCCTTCTGGATATTGTAGTCAGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCC 4708 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| | || || ||||||||||| || |||||||| || || || || || || Sbjct 4709 GCAAAGATAAGGCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTT 4761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499393459928920