Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015-
08-05] 40,243 sequences; 281,270,454 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq7861 141 9e-29
>seq7861
Length=6948
Score = 141 bits (156), Expect = 9e-29
Identities = 232/332 (70%), Gaps = 2/332 (1%)
Strand=Plus/Minus
Query 95042 ACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTG 95101
||||||||| | ||| || | || || ||| ||||| ||| ||| | || || |
Sbjct 3051 ACGACTGGGCTGGTCTCCGGGAGGACATTGCCAAGCACGGCGTGCGCAACTCCCTCCTCG 2992
Query 95102 TGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAAC 95161
|||| |||||||||||||||||||| |||||||||| ||||||||||||| ||||| |
Sbjct 2991 TGGCTCCCATGCCCACGGCCTCCACCTCGCAGATCCTGGGCAACAACGAGTGCTTCGAGC 2932
Query 95162 CCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACA 95221
| | ||| |||| | || | || ||||||| ||| || ||| |||| | |||
Sbjct 2931 CTTACACAAGCAACATCTATGCCCGGAGGGTGCTGAGCGGCGAGTTCACCGTGGTGAACC 2872
Query 95222 AGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAAC 95281
||||| | || ||| |||| || || | ||| || | | |||||| |
Sbjct 2871 AGCACTTGCTCAACGACTTGACAGACCTAGGCCTTTGGAATGCAGACATGAAGAACATTC 2812
Query 95282 TGCTACGCGC-CAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCG 95340
| | ||||| ||||||| ||| ||||||||||| | || || || ||| | ||
Sbjct 2811 TAAT-CGCGCACAACGGCAGCGTGCAGAACATCCCTAACATCCCCGATGACCTTAAACGT 2753
Query 95341 CTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372
|| |||||||| |||||||| ||| |||||
Sbjct 2752 CTGTACAAGACAGTGTGGGAAATCAAACAGCG 2721
Score = 140 bits (154), Expect = 3e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 93979 GGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGG 94038
|| || | ||||| || ||||| ||||| | || ||||| ||| || || |||||
Sbjct 4861 GGTATCTACGACACGCTGAAGGAGTGTGCTGCAATTTCAAAGAGCGCCGGAGGGATCGGC 4802
Query 94039 ATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCC 94098
||| |||| || | ||| | | || ||||| || || ||||| || |||||
Sbjct 4801 CTCAACATCCATAACATCCGTTCTACCAGTAGTTACATTCGGGGCACCAACGGAACCTCG 4742
Query 94099 AACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGT 94158
|||||| ||||||||||||| || ||||||||| || | || ||||| || || ||||||
Sbjct 4741 AACGGCATCGTCCCTATGCTTCGTGTCTTCAACGACACTGCCCGCTATGTCGATCAGGGT 4682
Query 94159 GGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGC 94208
||||| | | | |||||| ||||||| |||| || || || ||||||||
Sbjct 4681 GGTGGAAAGCGAAAGGGTGCTTTCGCCATCTACCTTGAACCTTGGCACGC 4632
Score = 104 bits (114), Expect = 2e-17
Identities = 141/196 (72%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 94468 ATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAAC 94527
||| |||| | || || |||||||| | || || || ||||||||||| | | |||
Sbjct 3880 ATCCTGGAGGCCCAAGTCGAGACGGGCAACCCATATATGTTGTTCAAGGATGCAGCAAAC 3821
Query 94528 GCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATT 94587
|| |||||||| ||| ||||||| |||||| |||||| ||||||| |||||
Sbjct 3820 CGTAAATCCAACCAACAGAACCTCGGCACCATCAAGTCCTCGAACTTGTGCACGGAGATC 3761
Query 94588 GTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCC 94647
|||||| |||||||| || || | || || || ||||| | ||||||| ||| ||
Sbjct 3760 ATCGAGTTCACTTCTCCCGAGGAAACGGCAGTATGCAACCTTGCCTCCATCGCCCTACCC 3701
Query 94648 ACTTTCGT--GCGAGA 94661
||| || ||||||
Sbjct 3700 CGTTTTGTACGCGAGA 3685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494474335678280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |