Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq7861 141 9e-29 >seq7861 Length=6948 Score = 141 bits (156), Expect = 9e-29 Identities = 232/332 (70%), Gaps = 2/332 (1%) Strand=Plus/Minus Query 95042 ACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTG 95101 ||||||||| | ||| || | || || ||| ||||| ||| ||| | || || | Sbjct 3051 ACGACTGGGCTGGTCTCCGGGAGGACATTGCCAAGCACGGCGTGCGCAACTCCCTCCTCG 2992 Query 95102 TGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAAC 95161 |||| |||||||||||||||||||| |||||||||| ||||||||||||| ||||| | Sbjct 2991 TGGCTCCCATGCCCACGGCCTCCACCTCGCAGATCCTGGGCAACAACGAGTGCTTCGAGC 2932 Query 95162 CCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACA 95221 | | ||| |||| | || | || ||||||| ||| || ||| |||| | ||| Sbjct 2931 CTTACACAAGCAACATCTATGCCCGGAGGGTGCTGAGCGGCGAGTTCACCGTGGTGAACC 2872 Query 95222 AGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAAC 95281 ||||| | || ||| |||| || || | ||| || | | |||||| | Sbjct 2871 AGCACTTGCTCAACGACTTGACAGACCTAGGCCTTTGGAATGCAGACATGAAGAACATTC 2812 Query 95282 TGCTACGCGC-CAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCG 95340 | | ||||| ||||||| ||| ||||||||||| | || || || ||| | || Sbjct 2811 TAAT-CGCGCACAACGGCAGCGTGCAGAACATCCCTAACATCCCCGATGACCTTAAACGT 2753 Query 95341 CTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 || |||||||| |||||||| ||| ||||| Sbjct 2752 CTGTACAAGACAGTGTGGGAAATCAAACAGCG 2721 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 93979 GGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGG 94038 || || | ||||| || ||||| ||||| | || ||||| ||| || || ||||| Sbjct 4861 GGTATCTACGACACGCTGAAGGAGTGTGCTGCAATTTCAAAGAGCGCCGGAGGGATCGGC 4802 Query 94039 ATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCC 94098 ||| |||| || | ||| | | || ||||| || || ||||| || ||||| Sbjct 4801 CTCAACATCCATAACATCCGTTCTACCAGTAGTTACATTCGGGGCACCAACGGAACCTCG 4742 Query 94099 AACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGT 94158 |||||| ||||||||||||| || ||||||||| || | || ||||| || || |||||| Sbjct 4741 AACGGCATCGTCCCTATGCTTCGTGTCTTCAACGACACTGCCCGCTATGTCGATCAGGGT 4682 Query 94159 GGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGC 94208 ||||| | | | |||||| ||||||| |||| || || || |||||||| Sbjct 4681 GGTGGAAAGCGAAAGGGTGCTTTCGCCATCTACCTTGAACCTTGGCACGC 4632 Score = 104 bits (114), Expect = 2e-17 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 94468 ATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAAC 94527 ||| |||| | || || |||||||| | || || || ||||||||||| | | ||| Sbjct 3880 ATCCTGGAGGCCCAAGTCGAGACGGGCAACCCATATATGTTGTTCAAGGATGCAGCAAAC 3821 Query 94528 GCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATT 94587 || |||||||| ||| ||||||| |||||| |||||| ||||||| ||||| Sbjct 3820 CGTAAATCCAACCAACAGAACCTCGGCACCATCAAGTCCTCGAACTTGTGCACGGAGATC 3761 Query 94588 GTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCC 94647 |||||| |||||||| || || | || || || ||||| | ||||||| ||| || Sbjct 3760 ATCGAGTTCACTTCTCCCGAGGAAACGGCAGTATGCAACCTTGCCTCCATCGCCCTACCC 3701 Query 94648 ACTTTCGT--GCGAGA 94661 ||| || |||||| Sbjct 3700 CGTTTTGTACGCGAGA 3685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494474335678280