Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1570 120 3e-22 seq1 91.5 1e-13 seq8895 82.4 8e-11 >seq1570 Length=19022 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 52419 GTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGC 52478 ||||||||| | ||||| |||| ||| ||| ||||||||||||||| |||| | | || Sbjct 12200 GTCGAGGGCATATTTTTCTCCGCCAGTTTTTGCGCCATCTTTTACATGAAAAAGCAGGGG 12141 Query 52479 ATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACG 52538 | |||||||| ||| |||||||||||||| | || ||||||||||||| ||||| Sbjct 12140 CTGATGCCCGGTCTGTCGTTCAGCAACGAGCTCATCGCGCGCGACGAAGGCATGCACCGC 12081 Query 52539 GACTTTGCGTGCCTCT 52554 || || || ||||||| Sbjct 12080 GATTTCGCTTGCCTCT 12065 >seq1 Length=211102 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/152 (74%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 52402 TGGTGGCCTTCGCCATAGTCGAGGGCGTGtt-tttttCCGGCAGCTTTGCCGCCATCTTT 52460 || |||| ||||| ||||| ||| | || |||||| | ||| |||| |||||| || Sbjct 114819 TGTTGGCATTCGCGTGCGTCGAAGGCATCTTCTTTTTCTGCCAGGTTTGACGCCATGTTC 114760 Query 52461 TACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGC 52520 ||||| ||| |||| |||||||| || ||||||| |||||| | || |||| Sbjct 114759 TACATGAAACAACAAGGACCGATGCCCGGTCTATCGTTCAGTAACGAGCTTATCGCGCGT 114700 Query 52521 GACGAAGGACTGCACACGGACTTTGCGTGCCT 52552 |||||||| ||||| || ||||||||||| Sbjct 114699 GACGAAGGCATGCACCACGATTTTGCGTGCCT 114668 >seq8895 Length=8815 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || ||||| |||||||| || || || ||| ||| || |||||||| || | Sbjct 773 GATTCTTTTTGGATGTTGTAATCAGCCAGTGTCCGCCCGTCTTCCAGTTGTTTGCCCGCG 714 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || | | |||||||| || || || ||||||||||| ||| |||| | || | Sbjct 713 AATATCAATCTTTGTTGGTCAGGTGGGATTCCTTCTTTGTC-TTGAATTTTGGCCTTGAC 655 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | ||| ||||| | || | || |||||||| || |||| Sbjct 654 GTTG-TCAATAGTGTCAGAACTCTCTACCTCCAAGGTGATGGTCTTACCAGTAAGCGTTT 596 Query 138599 TTACAAAAATCTGCATGG 138616 | ||||| |||||||||| Sbjct 595 TCACAAAGATCTGCATGG 578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496012761402960