Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq8895 136 3e-27 seq195 134 1e-26 seq12650 107 1e-18 >seq8895 Length=8815 Score = 136 bits (150), Expect = 3e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| ||||| |||||||| ||||||||||| || | | | ||||||| | |||| Sbjct 782 TGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGCCAGTGTCCGCCCGTCTTCCAGTTGT 723 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| ||| ||||||| | |||||||| ||| |||||||| ||||| ||||||| Sbjct 722 TTGCCCGCGAATATCAATCTTTGTTGGTCAGGTGGGATTCCTTCTTTGTCTTGAATTTTG 663 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || ||||| || | | ||||| || ||||| ||||| ||||| || Sbjct 662 GCCTTGACGTTGTCAATAGTGTCAGAACTCTCTACCTCCAAGGTGATGGTCTTACCAGTA 603 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || ||||| ||||| || ||||| Sbjct 602 AGCGTTTTCACAAAGATCTGCAT 580 >seq195 Length=29407 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || | ||| | ||| || ||||||||||| |||||||| | | ||||| ||||| Sbjct 27208 AACACGAGATGTAAGGTTGATTCTTTTTGTATATTGTAATCACCCAATGTTCTCCCGTCT 27149 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || |||||||| || || | ||||| || ||||||||| ||| ||||||||||| || Sbjct 27148 TCCAATTGTTTTCCTGCAAAAATCAATCGTTGTTGGTCGGGTGGCATTCCTTCCTTATCC 27089 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||| ||||| | ||||| ||||| | ||| ||||| | || || ||| Sbjct 27088 TGGATTTTAGACTTTACGTTATCTATCGTATCTGAAGATTCAACGTCGAGTGTTATAGTT 27029 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||||| | |||||| | ||| |||||||| Sbjct 27028 TTACCTGTTAAAGTTTTGATAAATATTTGCAT 26997 >seq12650 Length=5101 Score = 107 bits (118), Expect = 1e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 || || |||||| | || | ||||||||||| || ||||||||||| || |||| Sbjct 752 TGCTTTCCAGCGAAAATAAGGCGCTGTTGGTCTGGAGGGATTCCTTCCTTATCTTGAATT 693 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 ||| || || | || |||||||| || | || || || | |||||| ||||| ||| Sbjct 692 TTGGCCTTCACGTTGTCGATAGTATCACTGCTCTCGACTTCAAGGGTAATTGTTTTCCCT 633 Query 15151 GTCAGAGTTTTTACAAAAATTTGCATATTTGA 15182 || |||||||| |||||||| ||||||||||| Sbjct 632 GTGAGAGTTTTCACAAAAATCTGCATATTTGA 601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357216712961255