Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq12187 109 5e-19 seq1570 98.7 9e-16 seq195 96.9 3e-15 seq12650 91.5 1e-13 >seq12187 Length=9842 Score = 109 bits (120), Expect = 5e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||||| || | ||| ||||| || || |||||||| || ||| ||||| Sbjct 9632 CGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCCAGAGTGCGCCCG 9691 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || | ||||| |||||||| |||||||| ||||||||||| Sbjct 9692 TCCTCCAGCTGCTTCCCGGCAAAAATCAACCGCTGCTGGTCGGGAGGGATGCCCTCCTTA 9751 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| || || ||| | |||| || | ||||| | ||||| || || | || | Sbjct 9752 TCCTGAATCTTGGCCTTCACGTTG-TCAATAGTGTCTGAGCTCTCCACCTCCAGCGTGAT 9810 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCT 127109 || || ||||| || |||||||| || |||| Sbjct 9811 GGTCTTCCCGGTGAGGGTTTTTACGAAGATCT 9842 >seq1570 Length=19022 Score = 98.7 bits (108), Expect = 9e-16 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 47142 TTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTT 47201 ||| | ||||| || |||||||||| | || ||||| | ||| ||| || || ||| Sbjct 12218 TTGTTGGCTTTTGCGTGCGTCGAGGGCATATTTTTCTCCGCCAGTTTTTGCGCCATCTTT 12159 Query 47202 TACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGA 47261 |||||||||| | || | |||||||| || |||| ||||||||||| ||| || | Sbjct 12158 TACATGAAAAAGCAGGGGCTGATGCCCGGTCTGTCGTTCAGCAACGAGCTCATCGCGCGC 12099 Query 47262 GACGAAGGCCTGCACACCAACTTTGCCTGTCTCT 47295 ||||||||| ||||| | | || || || |||| Sbjct 12098 GACGAAGGCATGCACCGCGATTTCGCTTGCCTCT 12065 >seq195 Length=29407 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || | ||| |||||||| | ||||| || || |||||||| ||||||||||| ||| Sbjct 27223 CCTCCTCTTAAACGCAACACGAGATGTAAGGTTGATTCTTTTTGTATATTGTAATCACCC 27164 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | || || | |||||||| || | |||||||| || || ||||| || Sbjct 27163 AATGTTCTCCCGTCTTCCAATTGTTTTCCTGCAAAAATCAATCGTTGTTGGTCGGGTGGC 27104 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| ||| |||||| ||| | | || | || || | | || || Sbjct 27103 ATTCCTTCCTTATCCTGGATTTTAGACTTTACGTTATCTATCGTATCTGAAGATTCAACG 27044 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || | ||||| || || | |||||| | ||| || |||||| Sbjct 27043 TCGAGTGTTATAGTTTTACCTGTTAAAGTTTTGATAAATATTTGCATG 26996 >seq12650 Length=5101 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 126963 CTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCG 127022 ||| ||| ||||||||| | || | ||||| || || ||||| || || ||||| || Sbjct 757 CTACCTGCTTTCCAGCGAAAATAAGGCGCTGTTGGTCTGGAGGGATTCCTTCCTTATCTT 698 Query 127023 TGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTT 127081 ||||| ||| | ||||| ||| || || | ||||||||||| | ||| | ||| Sbjct 697 GAATTTTGGCCTTCACGTTGT-CGATAGTATCACTGCTCTCGACTTCAAGGGTAATTGTT 639 Query 127082 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || |||||||| |||||||||||||| Sbjct 638 TTCCCTGTGAGAGTTTTCACAAAAATCTGCAT 607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475261605266320