Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015-
08-05] 40,243 sequences; 281,270,454 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq12187 109 5e-19
seq1570 98.7 9e-16
seq195 96.9 3e-15
seq12650 91.5 1e-13
>seq12187
Length=9842
Score = 109 bits (120), Expect = 5e-19
Identities = 153/212 (72%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
|||| |||||| || | ||| ||||| || || |||||||| || ||| |||||
Sbjct 9632 CGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCCAGAGTGCGCCCG 9691
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || || || | ||||| |||||||| |||||||| |||||||||||
Sbjct 9692 TCCTCCAGCTGCTTCCCGGCAAAAATCAACCGCTGCTGGTCGGGAGGGATGCCCTCCTTA 9751
Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
||| || || ||| | |||| || | ||||| | ||||| || || | || |
Sbjct 9752 TCCTGAATCTTGGCCTTCACGTTG-TCAATAGTGTCTGAGCTCTCCACCTCCAGCGTGAT 9810
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCT 127109
|| || ||||| || |||||||| || ||||
Sbjct 9811 GGTCTTCCCGGTGAGGGTTTTTACGAAGATCT 9842
>seq1570
Length=19022
Score = 98.7 bits (108), Expect = 9e-16
Identities = 114/154 (74%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 47142 TTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTT 47201
||| | ||||| || |||||||||| | || ||||| | ||| ||| || || |||
Sbjct 12218 TTGTTGGCTTTTGCGTGCGTCGAGGGCATATTTTTCTCCGCCAGTTTTTGCGCCATCTTT 12159
Query 47202 TACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGA 47261
|||||||||| | || | |||||||| || |||| ||||||||||| ||| || |
Sbjct 12158 TACATGAAAAAGCAGGGGCTGATGCCCGGTCTGTCGTTCAGCAACGAGCTCATCGCGCGC 12099
Query 47262 GACGAAGGCCTGCACACCAACTTTGCCTGTCTCT 47295
||||||||| ||||| | | || || || ||||
Sbjct 12098 GACGAAGGCATGCACCGCGATTTCGCTTGCCTCT 12065
>seq195
Length=29407
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| || | ||| |||||||| | ||||| || || |||||||| ||||||||||| |||
Sbjct 27223 CCTCCTCTTAAACGCAACACGAGATGTAAGGTTGATTCTTTTTGTATATTGTAATCACCC 27164
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || | || || | |||||||| || | |||||||| || || ||||| ||
Sbjct 27163 AATGTTCTCCCGTCTTCCAATTGTTTTCCTGCAAAAATCAATCGTTGTTGGTCGGGTGGC 27104
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| || ||||| ||| |||||| ||| | | || | || || | | || ||
Sbjct 27103 ATTCCTTCCTTATCCTGGATTTTAGACTTTACGTTATCTATCGTATCTGAAGATTCAACG 27044
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|||| || | ||||| || || | |||||| | ||| || ||||||
Sbjct 27043 TCGAGTGTTATAGTTTTACCTGTTAAAGTTTTGATAAATATTTGCATG 26996
>seq12650
Length=5101
Score = 91.5 bits (100), Expect = 1e-13
Identities = 113/152 (74%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 126963 CTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCG 127022
||| ||| ||||||||| | || | ||||| || || ||||| || || ||||| ||
Sbjct 757 CTACCTGCTTTCCAGCGAAAATAAGGCGCTGTTGGTCTGGAGGGATTCCTTCCTTATCTT 698
Query 127023 TGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTT 127081
||||| ||| | ||||| ||| || || | ||||||||||| | ||| | |||
Sbjct 697 GAATTTTGGCCTTCACGTTGT-CGATAGTATCACTGCTCTCGACTTCAAGGGTAATTGTT 639
Query 127082 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || || |||||||| ||||||||||||||
Sbjct 638 TTCCCTGTGAGAGTTTTCACAAAAATCTGCAT 607
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475261605266320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |