Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq195 136 4e-27 seq8895 100 3e-16 >seq195 Length=29407 Score = 136 bits (150), Expect = 4e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 |||||| ||||| | |||||||| ||||| ||||| ||||| | | ||| | || Sbjct 27209 CAACACGAGATGTAAGGTTGATTCTTTTTGTATATTGTAATCACCCAATGTTCTCCCGTC 27150 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 ||||||||||||||||| | ||||||||||| ||||| || || || ||||| ||||| Sbjct 27149 TTCCAATTGTTTTCCTGCAAAAATCAATCGTTGTTGGTCGGGTGGCATTCCTTCCTTATC 27090 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 || ||||| || | || | |||| || || ||||| || || ||||| || | | Sbjct 27089 CTGGATTTTAGACTTTA-CGTTATCTATCGTATCTGAAGATTCAACGTCGAGTGTTATAG 27031 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || |||| |||||| | ||| |||||||| Sbjct 27030 TTTTACCTGTTAAAGTTTTGATAAATATTTGCAT 26997 >seq8895 Length=8815 Score = 100 bits (110), Expect = 3e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | | ||| || || || || ||||| |||||||| || ||||| | Sbjct 806 CCTCCACGTAGACGAAGCACGAGGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCA--G 749 Query 45174 ACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | || | | || |||| |||||| || ||| ||||||||| ||| ||||| || | Sbjct 748 CCAGTGTCCGCCCGTCTTCCAGTTGTTTGCCCGCGAATATCAATCTTTGTTGGTCAGGTG 689 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 | || |||||||| ||||||||||| |||| || | || | ||||| ||| ||| Sbjct 688 GGATTCCTTCTTTGTCTTGAATTTTGGCCTTGA-CGTTGTCAATAGTGTCAGAACTCTCT 630 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | || || || || || ||||| ||||| || ||||| Sbjct 629 ACCTCCAAGGTGATGGTCTTACCAGTAAGCGTTTTCACAAAGATCTGCAT 580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451775825440280