Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq30393 159 4e-34 seq7861 109 7e-19 seq27800 93.3 5e-14 seq7167 89.7 6e-13 seq188 87.8 2e-12 >seq30393 Length=6106 Score = 159 bits (176), Expect = 4e-34 Identities = 535/814 (66%), Gaps = 24/814 (3%) Strand=Plus/Plus Query 127220 TCCAGCTTGC-CGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCT 127278 |||||||| | | || || ||||| | || || || ||||| ||||| ||||| | ||| Sbjct 864 TCCAGCTTTCGCATATTCACCGACTCTTTTTTCAAAAAAGTTAGTCTTTCCATCCAAGCT 923 Query 127279 GATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGTTGGCAC--CCCAAT 127335 |||||| ||||||||||| ||||| ||||||| || |||| | | | | |||||| Sbjct 924 GATATTTTCCATAAAATCGAATGGATTCTTTG--TTGCAAAGATAATAGAATATCCCAAT 981 Query 127336 CTGTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCT-TCTCAGAGTTCA 127394 ||||| | | ||||| | ||| | || ||||| || ||||| | | || |||| Sbjct 982 -TGTTTTAATAATCGATCTGCAACGAATTCGATGTATTCCGACATTAATTTTTGA-TTCA 1039 Query 127395 TACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTT 127454 |||| || | |||||||| | || ||| || | || || | | ||||||| Sbjct 1040 TACCAATCATCCGACATGGGATTGATTCTGTGATAAATTCTTTTTCGTTCTGGACAGCTT 1099 Query 127455 CCCGTACGATGGCGTGAA-TAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAA---G 127510 | |||||| || | || ||| | |||| | | || || |||| | Sbjct 1100 CAGATACGATATTATGGACTATTGTTT-CTGAAGGTTTCCTTTTTAG-GTAATGAAAAAG 1157 Query 127511 AGTTCCACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAG 127570 |||| ||||| |||||||| || | || || || | || || | ||||| || || Sbjct 1158 AGTT--ACAGCGAACTCTTGATGCAATCCTTCATCTCTTGATATCAACTCATTRGAAAAA 1215 Query 127571 CACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAG 127630 | ||||| ||||| ||||| || || |||||||| || || ||||| || || ||||| Sbjct 1216 GAAAGACCGGGCATCAGACCTCGTTTTTTCAACCAAAATATGGCACAGAAGGAACCAGAA 1275 Query 127631 AAGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTT 127690 || | || || ||||||||||| ||||| | || ||| || || || || | | | | Sbjct 1276 AATAGAATACCTTCCACACACGCAAACGCTATTAAACGTTCTGCGAA--CGCCGTA-TCT 1332 Query 127691 GTATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATAC--ATGGGACGGTCTGGA 127748 ||| | ||| || ||||| | ||| |||| | || || | |||| ||| || | Sbjct 1333 TTATTGATCCATTTTTGAGCCCAGTATGC--TTTTTTTGAAACCGAAGGGATGGTGTGAA 1390 Query 127749 TCGCTTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTG 127808 |||| | ||| || | |||||| || ||| ||| ||||| |||||| | | Sbjct 1391 TCGCATTAAATAGATGAATCTTTTGTGCGTGATTTTTTATGTATCGATCTATCAATAAGC 1450 Query 127809 AATATGTTTCGCCGTGGACCATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTT 127868 || | | | ||| | ||| || | ||||| ||| || | || |||| Sbjct 1451 TGTACATCTGACTGTGAATAGATTCGTTGTATTGTTGATAACTGTAAAAGGCACGAGCTT 1510 Query 127869 CGCTTATCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGG 127928 | || || || ||||| |||||| | || ||| ||| |||||| ||||||| Sbjct 1511 CTGGAATTTGCACTTCATCACTAAAATTTCTGGCGAGATTTTCATTAACAATCCCATCGG 1570 Query 127929 ACCCAGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCT 127988 |||| || || || |||| |||| ||||||| |||||| |||| || | | Sbjct 1571 ACCCTGCGAAGAATGCCAATATATTGCTTATGAAAAATTGTTCAGAGTCGTCCAACGATT 1630 Query 127989 TCCAGTCGTCGAGATCCTTTGAGAGATCTACCTC 128022 ||| || || |||||||| | ||||| || Sbjct 1631 CCCAATCAGCGTCGTCCTTTGAAAAGTCTACTTC 1664 >seq7861 Length=6948 Score = 109 bits (120), Expect = 7e-19 Identities = 223/329 (68%), Gaps = 7/329 (2%) Strand=Plus/Plus Query 116863 GCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGA---CGACCAGCCTGGTTT 116919 |||||||| ||||| ||||| | |||| | ||||| || | |||| |||| | Sbjct 4632 GCGTGCCAAGGTTCAAGGTAGATGGCGAAAGCACCCTTTCGCTTTCCACCACCCTGATCG 4691 Query 116920 ACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCA 116979 ||||| | || || |||| || || |||||||| || | ||| || | || || Sbjct 4692 ACATAGCGGGCAGTGTCGTTGAAGACACGAAGCATAGGGACGATGCCGTTCGAGGTTCCG 4751 Query 116980 TTTGTCCCCCGAATACGAGACT--TGTTGGCTCTGACATCGTGGATGTGCATACCAATAC 117037 || || |||||||| | ||| || | | | || | ||||||| | || || | Sbjct 4752 TTGGTGCCCCGAAT--GTAACTACTGGTAGAACGGATGTTATGGATGTTGAGGCCGATCC 4809 Query 117038 CCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCG 117097 | || || | |||||| ||| || |||||| | || || ||||||| || ||||| Sbjct 4810 CTCCGGCGCTCTTTGAAATTGCAGCACACTCCTTCAGCGTGTCGTAGATACCTTCGATAC 4869 Query 117098 AGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGT 117157 ||| | || |||| || | ||||||||| || || || | ||| || || |||| Sbjct 4870 TGTCGTCTTTCATTGCAATCAAGAAGCAGCTGCTCAGCTGAGGGCGTGGCGTGCCGGCGT 4929 Query 117158 TGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 ||||||| || |||| |||||| ||||| Sbjct 4930 TGAAGAGCGTAGGTGACGCGTGTGTGAAC 4958 Score = 96.9 bits (106), Expect = 4e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 115902 ATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 115961 |||||||||| | ||||| ||||| |||||||| ||||| |||| ||| || | ||||| Sbjct 2912 ATAGATGTTGCTTGTGTAAGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGA 2971 Query 115962 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 ||| ||||||||||| |||| ||| ||| |||||| Sbjct 2972 GGCCGTGGGCATGGGAGCCACGAGGAGGGAGTTGCG 3007 >seq27800 Length=2063 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 127508 AAGAGTTCCACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAG 127567 ||||| || ||| || ||| ||| | |||||||| || | |||||| || || | Sbjct 624 AAGAGCAGCAGAGCGAAGTCTCTGTGCATCCCCTCGTCGCGAGCGATGAGCTCGTTGCTG 565 Query 127568 AAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCA 127627 ||| || || ||||| || || |||||||||||||| || || || || || | Sbjct 564 AAGGCGAGCCCCGGCATCAGTCCGCGCTTCTTCAACCAAAAGATAGCGCAGAAACTCGCG 505 Query 127628 GAGAAGAAGATCCCCTCCACACACGCGAACGCAAATAGACG 127668 ||||||||||| |||||||| |||||||| || | ||||| Sbjct 504 GAGAAGAAGATGCCCTCCACGCACGCGAAAGCGAGAAGACG 464 >seq7167 Length=7357 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 31661 GAACGCTTCAACCACTCCGTAGATGGTATCCCCTACGACTGGAAGTTCCTCTATGGTGTC 31720 || |||||| ||| ||| ||||| ||||| || |||| |||||||| || ||||| Sbjct 4316 GAGCGCTTCGGGCACGACGTGGATGGCATCCCATATGACTTCAAGTTCCTGTACGGTGTG 4375 Query 31721 GCCGGGTATCACCTCAAGGCATGTGAGATGAATGCCGCCTTTGGTCTCG 31769 ||||||| || | ||||| ||||| ||||| ||||||||||| |||| Sbjct 4376 CTCGGGTATAACATGAAGGCGTGTGAAATGAACGCCGCCTTTGGCCTCG 4424 >seq188 Length=36365 Score = 87.8 bits (96), Expect = 2e-12 Identities = 204/305 (67%), Gaps = 7/305 (2%) Strand=Plus/Minus Query 55401 CATCATATTCTTCACGAGGTCTGGGTTTTGCTTCAGGACATCGTTCATATTGGGGAGGGC 55460 |||||||||||| | || || || ||||| || || ||| ||||| || || | Sbjct 6138 CATCATATTCTTTATGAAATCCGGATTTTGTTTAGCGATATCATTCATGTTTGGTAT--- 6082 Query 55461 ACTCTTGAACATTGAGTTTGTCAGGTGGAACATCATCGCTGAACCACCCAACATCATGAT 55520 |||||| ||||| ||||||| ||| ||||| | || ||| ||| | | | Sbjct 6081 ACTCTTAAACATACTATTTGTCAAGTGAAACATGAATGCACTTCCAGACAATGTTAATAA 6022 Query 55521 GAGCTTCACCTCGGGGGCAACGTTCACCTTAGAGCGGTACTT--CACGTAGAGTTCCTCA 55578 | | | || ||||| | ||| || |||||| || ||| || ||| Sbjct 6021 CAATTCGATTTCAGGGGCCATAGCAGTCTTTGACGAGTACTTGTCATGTAACCTT--TCA 5964 Query 55579 AATACACCATCGTAGTCATCCACATTCTCCATGACGGACTCAGACCAACCCTCAAGTTGG 55638 || ||| ||| || ||||| | | ||||| || ||||||||||||||| | || | Sbjct 5963 AAAACATTATCATAATCATCAATACCGTCCATCACATTCTCAGACCAACCCTCTAATTTG 5904 Query 55639 ATCTCAAATGGGTTGTACCTTTTGTTGAGGAACTCCAGACCCGTCACACAGGCAACCAAC 55698 || |||||||| | ||||||||| || | ||||| || || |||||| | || | |||| Sbjct 5903 ATATCAAATGGATCGTACCTTTTATTTAAAAACTCAAGTCCTGTCACAGATGCCATCAAC 5844 Query 55699 ATACG 55703 || || Sbjct 5843 ATTCG 5839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613198582871880