Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq7861 105 1e-17 >seq7861 Length=6948 Score = 105 bits (116), Expect = 1e-17 Identities = 220/319 (69%), Gaps = 13/319 (4%) Strand=Plus/Plus Query 204200 AAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCG 204259 || || ||| |||||||| |||| | | |||| | ||| | || ||||| |||| Sbjct 2886 AACTCGCCGCTCAGCACCCTCCGGGCATAGATGTTGCTTGTGTAAGGCTCGAAGCACTCG 2945 Query 204260 TTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTG 204319 |||||||| | ||||| | |||| |||||||||||||||||||| ||| ||||||||| Sbjct 2946 TTGTTGCCCAGGATCTGCGAGGTGGAGGCCGTGGGCATGGGAGCCACGAGGAGGGAGTTG 3005 Query 204320 CGCACACCGTATTTTTGGACCCTGCGCTTC---AGAGAGGTCCAGTCGTG--CATCGCAC 204374 ||||| |||| || | | || || | ||| | ||||||||| || | Sbjct 3006 CGCACGCCGTGCTT---GGCAATGTCCTCCCGGAGACCAGCCCAGTCGTGACGGTCTGAG 3062 Query 204375 TGGGTTTC-ACGCCCCACATGTCGAACTGAAAGATG-CCTTGACTGACTGGGCTGCCCTT 204432 ||| || || ||||||| ||| ||| || || |||| || | |||||||| | Sbjct 3063 GGGGCCTCAACTCCCCACAGATCGTGCTG-CAGCTGACCTTTGCTCATGGGGCTGCCTTC 3121 Query 204433 GTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCA-TGGCGTGAT 204491 |||||| ||||| ||||| | || |||| ||| || ||| | || || || Sbjct 3122 ATACGTCTCATAAGTACCCTCCTCCTGGGCTAGCTGGCAGGACTCGGTGAGTGCCGCGA- 3180 Query 204492 AGTACATGGTCTCAAAGAT 204510 |||| | ||||||||||| Sbjct 3181 AGTAAACAGTCTCAAAGAT 3199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794755207116080