Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq12187 127 5e-24 seq8895 120 7e-22 seq21550 111 4e-19 seq18016 102 2e-16 seq13311 96.9 8e-15 seq9493 89.7 1e-12 seq26458 84.2 5e-11 >seq12187 Length=9842 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| || || |||||||| |||| |||||||| |||| ||| Sbjct 9626 CGCAGGCGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCCAGAGTG 9685 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||| || || | ||||||||||| ||| || || Sbjct 9686 CGCCCGTCCTCCAGCTGCTTCCCGGCAAAAATCAACCGCTGCTGGTCGGGAGGGATGCCC 9745 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||||||| || | ||||||| | || || |||| | Sbjct 9746 TCCTTATCCTGAATCTTGGCCTTCACGTTGTCAATAGTGTCTGAGCTCTCCACCTCCAGC 9805 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623 ||||| ||||| || ||||| ||||| || || || Sbjct 9806 GTGATGGTCTTCCCGGTGAGGGTTTTTACGAAGAT 9840 >seq8895 Length=8815 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| ||||| || || ||||||| |||||| ||||||| |||| || ||| Sbjct 791 AGCACGAGGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGCCAGTGTCCGCCCGTCT 732 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||| || || || ||||| || | | || ||||| || ||||||||| || Sbjct 731 TCCAGTTGTTTGCCCGCGAATATCAATCTTTGTTGGTCAGGTGGGATTCCTTCTTTGTCT 672 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||| || ||| ||| || | ||||| | | ||||| ||||| ||||| ||| Sbjct 671 TGAATTTTGGCCTTGACGTTGTCAATAGTGTCAGAACTCTCTACCTCCAAGGTGATGGTC 612 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || ||||||||||| || || Sbjct 611 TTACCAGTAAGCGTTTTCACAAAGATCTG 583 >seq21550 Length=3044 Score = 111 bits (122), Expect = 4e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || ||||||||||||| ||||||||| |||| || Sbjct 2659 CGGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCCAGTGTG 2600 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||||||||||||| || ||||| || | |||||||||||| || || Sbjct 2599 CGCCCATCCTCCAGCTGCTTTCCCGCAAAGATCAGTCTCTGCTGGTCCGGGGGGATGCCC 2540 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| |||||||| || ||| | || | ||||| | | || ||||| Sbjct 2539 TCTTTGTCCTGAATTTTCGCCTTTAACTCCTCAATCGTGTCACTAGGACACACGTCCAAA 2480 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAA 199622 ||||| ||||| || ||||| || || | |||| Sbjct 2479 GTGATGGTCTTTCCGGTGAGTGTCTTGATGAAAA 2446 >seq18016 Length=3756 Score = 102 bits (112), Expect = 2e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || ||||||||||||| ||||||||||| | ||| | || || Sbjct 106 AGCACCAAGTGCAGGGTGGACTCCTTTTGGATATTGTAGTCAGCGAGAGTGCGACCGTCC 165 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || |||||||| || ||||||||||||||||||||||| || ||||||| Sbjct 166 TCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCAGGTGGAATTCCT 216 >seq13311 Length=4779 Score = 96.9 bits (106), Expect = 8e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || |||||||| |||| ||||||||||||| || | || || Sbjct 4634 AGCACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCAGCCAGGGTGCGGCCGTCC 4693 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| || ||||||||||| || |||||| || ||| Sbjct 4694 TCGAGCTGCTTGCCCGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCC 4753 Query 199538 TGAATCTTTTGCTTCACG 199555 |||||||| ||||||| Sbjct 4754 TGAATCTTGGCCTTCACG 4771 >seq9493 Length=6168 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| ||||| || | ||||| || |||||||| |||||||||| Sbjct 1329 CCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 1270 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || |||||||| ||| ||||||| Sbjct 1269 TCAGGCGTTGCTGGTCAGGAGGAATTCCT 1241 >seq26458 Length=3991 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| ||||||||||| | || Sbjct 2088 CGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCAGCGAGCGTG 2029 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 | || || ||||| ||||| || ||||| || || ||||||||||| ||| Sbjct 2028 CGACCGTCCTCCAGTTGCTTCCCCGCGAAAATCAGGCGCTGCTGGTCGGGA 1978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178313732181281