Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq12187 96.9 2e-15 seq195 82.4 5e-11 >seq12187 Length=9842 Score = 96.9 bits (106), Expect = 2e-15 Identities = 167/239 (70%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 39479 ATATCCAAT-CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGT 39537 |||||||| || ||| || |||| ||||| ||||| |||| ||| || || || Sbjct 9605 ATATCCAAAACAAAGCCTCCACGCAGGCGCAGCACCAAGTGCAGCGTGGACTCCTTCTGG 9664 Query 39538 ATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGC 39597 ||||| || || |||| | ||| | || |||| || |||||| ||||||| || ||| Sbjct 9665 ATATTGTAGTCCGCCAGAGTGCGCCCGTCCTCCAGCTGCTTCCCGGCAAAAATCAACCGC 9724 Query 39598 TGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACT-GT 39656 ||||| || | || | ||| || || || || || || | ||| | | | || Sbjct 9725 TGCTGGTCGGGAGGGATGCCCTCCTTATCCTGAATCTTGGCCTTCA-CGTTGTCAATAGT 9783 Query 39657 GTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCT 39715 ||||| ||| ||||| |||| || || || || || || | |||||||||||||||| Sbjct 9784 GTCTGAGCTCTCCACCTCCAGCGTGATGGTCTTCCCGGTGAGGGTTTTTACGAAGATCT 9842 >seq195 Length=29407 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||||||| || | ||| || || ||||||||||||||| ||||| || Sbjct 27223 CCTCCTCTTAAACGCAACACGAGATGTAAGGTTGATTCTTTTTGTATATTGTAATCACCC 27164 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || | | || ||||||||||| || ||||||| || || || || || | || Sbjct 27163 AATGTTCTCCCGTCTTCCAATTGTTTTCCTGCAAAAATCAATCGTTGTTGGTCGGGTGGC 27104 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || ||||| || | | ||| || |||| ||| ||| Sbjct 27103 ATTCCTTCCTTATCCTGGATTTTAGACTTTACGTTATCTATCGTATCTGAAGATTCAACG 27044 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | || || |||||||| ||||||||||| | || || |||||| Sbjct 27043 TCGAGTGTTATAGTTTTACCTGTTAAAGTTTTGATAAATATTTGCATG 26996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347199228563219