Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq12187 120 3e-22 seq13311 105 7e-18 seq8895 105 7e-18 seq21550 104 2e-17 seq18016 102 8e-17 seq1570 98.7 1e-15 seq27800 96.9 3e-15 seq22337 87.8 2e-12 seq4459 82.4 8e-11 >seq12187 Length=9842 Score = 120 bits (132), Expect = 3e-22 Identities = 162/223 (73%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 38250 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC 38309 || ||||||||||| ||||| || || |||||||| | || || ||| | | |||| Sbjct 9840 ATCTTCGTAAAAACCCTCACCGGGAAGACCATCACGCTGGAGGTGGAGAGCTCAGACACT 9781 Query 38310 GTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCG 38368 | | |||| | || | || || | || || ||||| || || ||||||| ||||| Sbjct 9780 ATTGACAACG-TGAAGGCCAAGATTCAGGATAAGGAGGGCATCCCTCCCGACCAGCAGCG 9722 Query 38369 GCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 38428 | | |||| || || || |||||||| |||| |||||| || |||||||| ||||| Sbjct 9721 GTTGATTTTTGCCGGGAAGCAGCTGGAGGACGGGCGCACTCTGGCGGACTACAATATCCA 9662 Query 38429 AAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| | |||||||| ||||||||||| || | || ||| Sbjct 9661 GAAGGAGTCCACGCTGCACTTGGTGCTGCGCCTGCGTGGAGGC 9619 >seq13311 Length=4779 Score = 105 bits (116), Expect = 7e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| |||||||||||| | ||||| ||||| || || | |||||||| ||||| || Sbjct 4752 GACAAGGAGGGAATTCCCCCTGACCAGCAGCGCCTTATCTTTGCGGGCAAGCAGCTCGAG 4693 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| |||||||| |||||||| ||||| ||||| | || ||||| |||||||| Sbjct 4692 GACGGCCGCACCCTGGCTGACTACAATATCCAGAAGGAGTCTACCCTGCACTTGGTGCTC 4633 Query 38457 CGT 38459 ||| Sbjct 4632 CGT 4630 >seq8895 Length=8815 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || |||||||| || || || ||||||||| | || || ||| | Sbjct 580 ATGCAGATCTTTGTGAAAACGCTTACTGGTAAGACCATCACCTTGGAGGTAGAGAGTTCT 639 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | ||||| | |||||||| ||||| || | ||||| Sbjct 640 GACACTATTGACAACG-TCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCACCTGACCA 698 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | |||||||||||| ||||| |||| ||| || || || ||||| Sbjct 699 ACAAAGATTGATATTCGCGGGCAAACAACTGGAAGACGGGCGGACACTGGCTGATTACAA 758 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| ||| | || || || | ||||| ||| Sbjct 759 CATCCAAAAAGAATCTACTCTTCACCTCGTGCTTCGT 795 >seq21550 Length=3044 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC-AC 38302 ||||| | ||| | || || ||||| || || |||||||| | ||||| | | || | Sbjct 2439 ATGCAGCTTTTCATCAAGACACTCACCGGAAAGACCATCACTTTGGACGT-GTGTCCTAG 2497 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | || | ||||| | ||||||||||| || ||| | ||||| Sbjct 2498 TGACACGATTGAGGAGTTAAAGGCGAAAATTCAGGACAAAGAGGGCATCCCCCCGGACCA 2557 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | || || | ||||| || |||||||| || | |||||| || |||||||| Sbjct 2558 GCAGAGACTGATCTTTGCGGGAAAGCAGCTGGAGGATGGGCGCACACTGGCAGACTACAA 2617 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||||| | || ||||| |||||||||| Sbjct 2618 CATCCAAAAGGAGTCCACCCTGCACCTGGTGCTGCG 2653 >seq18016 Length=3756 Score = 102 bits (112), Expect = 8e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 |||||||| | ||||| ||||| ||||| | ||||||||| ||||| || |||| ||| Sbjct 215 GGAATTCCACCTGACCAGCAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGTCGC 156 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || ||| |||||||| ||||||||||| | || ||||| |||||||| ||| Sbjct 155 ACTCTCGCTGACTACAATATCCAAAAGGAGTCCACCCTGCACTTGGTGCTCCGT 102 >seq1570 Length=19022 Score = 98.7 bits (108), Expect = 1e-15 Identities = 164/232 (71%), Gaps = 9/232 (4%) Strand=Plus/Plus Query 132886 AACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTG 132945 |||| | |||||| || |||| |||| ||| ||||| | | ||||| ||||||||| Sbjct 12061 AACAAGAGGCAAGCGAAATCGCGGTGCATGCCTTCGTCGCGCGCGATGAGCTCGTTGCTG 12120 Query 132946 AAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005 || | || |||||||| || || | ||||| | |||| |||||| |||||| | Sbjct 12121 AACGACAGACCGGGCATCAGCCCCTGCTTTTTCATGTAAAAGATGGCGCAAAAACTGGCG 12180 Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCT 133065 || || || | |||||||||| ||| ||||||| || |||| ||| ||| || Sbjct 12181 GAGAAAAATATGCCCTCGACGCACGCAAAAGCCAACA--ACCTCGTGGAA--AAGCTGCT 12236 Query 133066 -TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTC--TTTGACGCACG 133114 | ||| |||| | ||| |||||||||| | ||||| || ||||||| Sbjct 12237 CTGGCTTTCGATGTACCGCTGCGCCCATTC--CGTTTTCCGCTTCACGCACG 12286 >seq27800 Length=2063 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 132893 AGCA-AGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTC 132951 |||| ||| ||||| | |||| |||||||| | | ||||| ||||||||||| | Sbjct 618 AGCAGAGCGAAGTCTCTGTGCATCCCCTCGTCGCGAGCGATGAGCTCGTTGCTGAAGGCG 559 Query 132952 AAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAG 133011 | || ||||| || ||||| || || | |||||| || ||| |||||| | || ||| Sbjct 558 AGCCCCGGCATCAGTCCGCGCTTCTTCAACCAAAAGATAGCGCAGAAACTCGCGGAGAAG 499 Query 133012 AAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTG 133071 |||| |||||| ||| ||||||||| | || || ||| ||| | |||| |||| Sbjct 498 AAGATGCCCTCCACGCACGCGAAAGCGAGAAGACGAGCGCAGAA---AGACTCTTCGCTG 442 Query 133072 GCGATCCAGCGCAGCGCCCATTCGGCCTTTTCT 133104 ||| | || | |||||| ||| |||||| Sbjct 441 TCGACGTACCGAACCGCCCAGGCGG--TTTTCT 411 >seq22337 Length=5046 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950 || ||| || |||||||| |||||||| ||||| | |||||| || |||||| || || Sbjct 4946 CAGGCACGCGAAGTCGCAGTGCAAGCCTTCGTCACGGGAAATTAGCTCGTTGGAAAAGGT 5005 Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGG 132991 | |||||||| ||||||||||| || | |||| |||||| Sbjct 5006 AAGTCCGGGCATCAGGCCGCGTTTCTTCAACCAATATATGG 5046 >seq4459 Length=9375 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/195 (70%), Gaps = 5/195 (3%) Strand=Plus/Minus Query 132910 TGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCG 132969 |||| ||| ||||| | | || || ||||||||||||| | |||||||| | || Sbjct 2203 TGCATGCCTTCGTCACGAGCGATAAGCTCGTTGCTGAAAGCTAGTCCGGGCATCAATCCC 2144 Query 132970 CGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCC 133029 || ||||| ||| | |||||||| |||||| |||| || |||| |||||| ||| Sbjct 2143 CGCTTTTTCAGCAAGAATATGGCACAGAAACTCGCCGAGAAAAAGATGCCCTCCACGCAT 2084 Query 133030 GCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCC 133089 ||||| || | || || ||| || || | || | |||| | || | || | |||| Sbjct 2083 GCGAATGCGAGCAAACG--CGCTGATAATGAC-TCCTCGCTGTCTATGTACCGAATCGCC 2027 Query 133090 CATTCGGCCTTTTCT 133104 ||| ||| |||||| Sbjct 2026 CATACGG--TTTTCT 2014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499921194325120